| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1995 |
|---|
| Symbol | |
|---|
| ID | 5194269 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 2257301 |
|---|
| End bp | 2258122 |
|---|
| Gene Length | 822 bp |
|---|
| Protein Length | 273 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640586453 |
|---|
| Product | shikimate 5-dehydrogenase |
|---|
| Protein accession | YP_001267319 |
|---|
| Protein GI | 148547217 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.000106153 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0000496084 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCGACAA CTCCAAGCCG GGACACCGTG CTTTGCATCT CTCTGGCCGG TCGCCCCGGC
ACCTTCGGCG TGCGCTTTCA CAACCACCTG TACCAGCAGT TGGGCCTGGA CTTCTACTAT
AAGGCCATGC GCACCGATGA CCTGCCGGCG GCGGTGGCAG GGATCCGCGC CTTGGGTATT
CGCGGCTGCG GGGTGTCGAT GCCGTACAAG GAAGCCTGCA TGGCCTTGGT CGACGAAATC
GATCCTTCGG CGGCGGCCAT CGACTCGGTC AATACCCTTG TCAATTGCAA TGGCCACCTG
AAGGCCTACA ACACCGATTA CCTGGCCGTG CGCCAATTGC TGGTTCAGCA TCAGGTCGAT
CCGGGCACTG CCTTTGCCCT GCGAGGCAGC GGTGGCATGG CCAAGGCCGT GGCCAGCGCC
TTGCGCGATG CCGGGTTTGC CGAAGGCATC ATCGTTGCAC GCAACGAGCA GGCCGGGCGT
CAGTTGGCGG ATGTCTGTGG TTATCGCTGG GTGCCTGAGC CAGGCGACCT CTGCCCGCCG
ATGCTGGTGA ACGTGACGCC GATCGGTATG GCAGGTGGGC AGGAGGCAGA AGAGCTGGCG
TTTCCCGAGC ACGCCATCGC GGCGGCGGAG CGGGTGTTCG ATGTGGTGGC AATGCCGGCG
CAGACGCCGT TGATTCGCCG GGCTCAGGCG TTGGGCAAGC CGGTGATCAC TGGGCTGGAG
GTCATTGCGC TGCAGGCGCT GGAACAGTTC GTGTTATACA CCGGGGTAAG GCCGACGCAG
GCGCAGGTGG ATGCGGCGGT GGCATACGCG CGGGCTAGCT AG
|
|---|
| Protein sequence | MPTTPSRDTV LCISLAGRPG TFGVRFHNHL YQQLGLDFYY KAMRTDDLPA AVAGIRALGI
RGCGVSMPYK EACMALVDEI DPSAAAIDSV NTLVNCNGHL KAYNTDYLAV RQLLVQHQVD
PGTAFALRGS GGMAKAVASA LRDAGFAEGI IVARNEQAGR QLADVCGYRW VPEPGDLCPP
MLVNVTPIGM AGGQEAEELA FPEHAIAAAE RVFDVVAMPA QTPLIRRAQA LGKPVITGLE
VIALQALEQF VLYTGVRPTQ AQVDAAVAYA RAS
|
|---|
| |