| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1955 |
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| Symbol | |
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| ID | 5192928 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 2225080 |
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| End bp | 2226105 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640586416 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001267282 |
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| Protein GI | 148547180 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.319397 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.247147 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGTTAA GCAAACGTGT AACCGCAGTG CTGTCCGCCA GCCTGCTGAC CCTGGCATGT
CAGGCCGCCC AGGCCGCCGA CAGCCTCAAC TTCGTCAGCT GGGGCGGTAC GACCCAGGAC
GCCCAGAAAG AAGCGTGGGC AGTACCGTTC ACCAAAGCCA CGAACATCAA GGTCGTGCAG
GACGGTCCCA CCGACTACGG CAAGCTCAAG GCCATGGTCG AGAGCGGTAA CGTGCAGTGG
GACGTGGTCG ACGTCGAAGC CGACTTTGCC CTGCGTGCCG CCAGCGAAGG CCTGCTCGAA
CCCCTGGACT TCAACCAGAT CAAGCGCGAC AAGATCGACC CACGCTTCGT CTCTGATCAT
GGCGTCGGCT CATTCTTCTT CTCCTTCGTG CTCGGCTACA ACGAAGGCAA GCTCGGGGCC
AACAAGCCGG TGGACTGGAC CGCGCTGTTC GACACCAAGG CCTACCCCGG CAAGCGAGCC
CTGTACAAAT GGCCCAGCCC CGGCGTGCTG GAACTGGCCC TGCTGGCCGA CGGCGTAGCC
CCTGACAAGC TGTACCCGCT GGACCTGGAC CGCGCCTTCA AGAAGCTCGA CACCATCAAG
AAAGACATCG TCTGGTGGGG CGGTGGCGCC CAGTCACAGC AGTTGCTGGC CTCGGGTGAA
GCCTCGCTCG GCCAGTTCTG GAATGGCCGT GTCTACGCCC TGCAGCAAGA CGGTGCACCG
GTGGGTGTGA GCTGGAAGCA GAACCTGGTC ATGGCCGACT TCCTGGTCAT CCCCAAAGGC
GCCAAGAACA AGGAAGCGGC CATGAAATTC CTGGCCAACG CCAGCAGCGC CGAAGGCCAG
GCCGAATTCG CCAACAAAAC CGCCTATGCG CCGGTCAACG TCGACAGCGT GGCCAAGCTG
GACAAGGACC TCGCGCCAAA CCTGCCAACT GCCTACGCCC AGGACCAGGT CACCCTCGAC
TTCGCCTACT GGGCCAAGAA CGGTCAAGCT ATCGCGGCCC GCTGGAATGA GTGGTTGGTC
AAATGA
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| Protein sequence | MLLSKRVTAV LSASLLTLAC QAAQAADSLN FVSWGGTTQD AQKEAWAVPF TKATNIKVVQ
DGPTDYGKLK AMVESGNVQW DVVDVEADFA LRAASEGLLE PLDFNQIKRD KIDPRFVSDH
GVGSFFFSFV LGYNEGKLGA NKPVDWTALF DTKAYPGKRA LYKWPSPGVL ELALLADGVA
PDKLYPLDLD RAFKKLDTIK KDIVWWGGGA QSQQLLASGE ASLGQFWNGR VYALQQDGAP
VGVSWKQNLV MADFLVIPKG AKNKEAAMKF LANASSAEGQ AEFANKTAYA PVNVDSVAKL
DKDLAPNLPT AYAQDQVTLD FAYWAKNGQA IAARWNEWLV K
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