| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1935 |
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| Symbol | |
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| ID | 5193460 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 2207123 |
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| End bp | 2208283 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640586396 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_001267262 |
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| Protein GI | 148547160 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2202] FOG: PAS/PAC domain
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.487493 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTTCAG CCGACTGCCT CGACGCTTCC CTCATGCCCG CCCATCGTTA TGAACAGCTG
GTTCAGTCGG TGGTGGATTA TGCCATCTAC ATGCTCGACC CTTCCGGCCA TGTGGTGTCT
TGGAACGCAG GCGCGCAACG GATCAAGGGT TACCGTAGGG ATGAAGTGAT CGGCAAGCAT
TTTTCGTTGT TCTTCACCCC ACAGGATTGT GCGCAGGGCC GCCCCGAAGG CCTGCTGCGT
CAGGCGCTGG AGCAGGGTGT GGCGCAGGAC GAAGGCTGGC GGGTGCGCAA GGACGGCACG
CAGTTCTGGG CCTTGGCGGC ACTGGATGTG ATCCGTGATG AGAATGGCCA GATCATTGGC
CTGGCCAAGG TGACACGTGA TATCACTGAC CGTCGCGAGA CGGCGCAGCA GCTCGACGCA
GTGCGCGCCC AGCTGTTCCA GGCGCAGAAG CTTGAAGCTC TCGGCCAGTT GACCGGTGGT
CTGGCGCATG ACTTCAACAA CATGTTGACC ATTATCATCA GCTCGGCGCG CCTGGCGCTG
GCCACCCAGG ACCCGGCACG CACCCAGCGC ATGTTGCAGC ACATCCTCGA TGCCAGCCAG
CGTGGCACCG AACTGACCCA ACAACTGCTC AGTTTTGCCC GTCGCCGCAA GTTCGATGTG
GCCAGCGTTG CTCCGGCAGA GCTGGTTAAC GCTACGCGTG GCCTGCTTGA ACATGCATTG
CCAAGCTCAA TTGACTTGAA GGTGTTGCTG CAACCGGACC TGCCGTTGAT CGAGGTGGAT
GCCGGGCAAC TGCAGATGGT GTTGCTCAAC CTGTTGTTCA ATGCCCGTGA TGCCATCGAC
GGGCATGGCC GCATCAGCCT GACTGTCGAT GTGGTCGAGC TGTTCGGCGA AGTTGAAGGG
CTGAAGGGCA GTTTCGTGCG CTTCGAGGTG GAAGACAGCG GCGCAGGCAT ACCCACAGAG
GTACTGCCGC GTATCTTCGA GCCGTTTTTC ACCACCAAGC CTTTCGGCAA GGGTACCGGC
CTGGGGCTTA GCCAGGTCTA TGGCTTCGCC CGGCAAAGTG GTGGTGCCAT TTGTGTCGAC
AGCGAGCCTG GCCGGGGAAC TTGCATGCGA CTGTACTTGC CAATGTATCA GGACCAGACG
GATAGCCCAC TCGACAGGTA G
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| Protein sequence | MVSADCLDAS LMPAHRYEQL VQSVVDYAIY MLDPSGHVVS WNAGAQRIKG YRRDEVIGKH
FSLFFTPQDC AQGRPEGLLR QALEQGVAQD EGWRVRKDGT QFWALAALDV IRDENGQIIG
LAKVTRDITD RRETAQQLDA VRAQLFQAQK LEALGQLTGG LAHDFNNMLT IIISSARLAL
ATQDPARTQR MLQHILDASQ RGTELTQQLL SFARRRKFDV ASVAPAELVN ATRGLLEHAL
PSSIDLKVLL QPDLPLIEVD AGQLQMVLLN LLFNARDAID GHGRISLTVD VVELFGEVEG
LKGSFVRFEV EDSGAGIPTE VLPRIFEPFF TTKPFGKGTG LGLSQVYGFA RQSGGAICVD
SEPGRGTCMR LYLPMYQDQT DSPLDR
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