Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_1913 |
Symbol | |
ID | 5193729 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 2187703 |
End bp | 2188722 |
Gene Length | 1020 bp |
Protein Length | 339 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640586377 |
Product | putative periplasmic protease |
Protein accession | YP_001267245 |
Protein GI | 148547143 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.786378 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGGAGTTTC TTGCCGAATA CGCAAGCTTT CTCGCCAAAA CCGCCACCCT GGTCATCGCC ATATTGGTGG TGCTGTCGGC GATCGCCGGG CTGCGTGGCA AAGGTCGGCG CAAATCGGGC GGGCAATTAC AGGTCACCCG GCTGAACGAT TTTTACAAGG ACCTGCGTGA GCGCCTGGAG TCCGGCTTGC TCGACAAGGC CCAGCTCAAG GCCCTGCGCA AGCAGCAGGC CAAGGCGGAA AAACAGCAGA AGAAGGGCAA GGCCGAGGAC AAGAGCCGGG TATTCGTACT GGACTTCGAT GGCGACATCA AAGCCTCAGC CACCGAAAGC CTGCGCAACG AAATCACTGC GCTGCTGACG CTCGCCACCG CGCGTGACGA AGTGGTACTG CGCCTGGAAA GCGGCGGTGG CCTGGTGCAC AGTTACGGCT TGGCTGCGTC GCAACTGGCG CGTATTCGCC AGGCGGGCAT CCCGTTGACC GTGTGTATCG ACAAGGTGGC TGCCAGCGGT GGGTACATGA TGGCCTGCAT CGGCGAGAAG ATCGTCAGTG CCCCATTCGC CGTACTGGGG TCTATTGGCG TGGTGGCGCA GTTGCCCAAC GTCAACCGCC TGCTGAAAAA ACACGACATC GACTTCGAAG TGCTGACTGC TGGCGAATAC AAGCGCACCC TGACCGTCTT TGGCGAAAAC ACCGAGAAGG GCCGGGAGAA GTTCCAGGAA GACCTGGACA TCACTCACCA GTTGTTCAAG GATTTCGTTT CCCGCTATCG TCCGCAGTTG CACATCGATG AAGTGGCCAC TGGCGAAGTC TGGCTGGGCG TGGCCGCCTT GAATCGCAAG CTGGTTGACG AGTTGCAGAC CAGTGACGAG TACCTGAGCG AGCGCGCACG CAACGCCAAC CTGTTCCACC TGCACTATGC CGAACGCAAG AGCCTGCAGG AGCGGATTGG CATGGCCGCC AGCGGTACCG TGGAGAACGC GGTGGTGGGC TTGTGGAGTA AACTCAGCCG CCTGCGCTAA
|
Protein sequence | MEFLAEYASF LAKTATLVIA ILVVLSAIAG LRGKGRRKSG GQLQVTRLND FYKDLRERLE SGLLDKAQLK ALRKQQAKAE KQQKKGKAED KSRVFVLDFD GDIKASATES LRNEITALLT LATARDEVVL RLESGGGLVH SYGLAASQLA RIRQAGIPLT VCIDKVAASG GYMMACIGEK IVSAPFAVLG SIGVVAQLPN VNRLLKKHDI DFEVLTAGEY KRTLTVFGEN TEKGREKFQE DLDITHQLFK DFVSRYRPQL HIDEVATGEV WLGVAALNRK LVDELQTSDE YLSERARNAN LFHLHYAERK SLQERIGMAA SGTVENAVVG LWSKLSRLR
|
| |