| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1902 |
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| Symbol | |
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| ID | 5191933 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 2178257 |
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| End bp | 2179666 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640586366 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001267234 |
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| Protein GI | 148547132 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000136063 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTTTTC CAGCCCAATC GCGCGTGTTG CCTTATGTCG TTGTACTTGG CGTGACCTTC
GCCCTCACCC TGGGCGGCAT CCTGGCACGC CCGATCGAAT CGCTGTCGCT GTTCTGGCCA
GTGAATGCGG TACTGGCCGG CGTACTCCTG CGCTACCCCC GTCAAGCCAC GTTTACGGGC
TTTTGCCTGG TGTGGCTGGC CATGGTGGGG GCCGACCTGC TGTGTGGCAG CGCCTGGGGG
CCGGCTCTGT GGTTCAACCT GTGCAATCTT GGCGTGGTGG TCACCCTCTG GCAGCTGATG
TCGCGCTTGC CTCGCATGCA CCGGCGCATG CGCAGCCCGC GTGGCGTGCT TAGCGTGTTC
GCTGCCTGCG CCGCCGCTGC CATGGTGGCG GCCAGCATGG CAGCGGTAAT GGCCGCACCG
TGGTTCGAAC AGTCGTTGCG CGCCACCTGG CTAGCCTGGT TCAGCGAACA GTTCTCGACC
GGTGTGCTGG TACTGCCGGT GCTGCTTACA GCGCCCTCGG TGCGGGCCTT GGTGCGCGGC
GGCGCGCAAC CCATCCGCCT GGCGCCGTTG CTGGTGCTGC TGGCCTCGCT GGCATTCAGC
ATCGCCTTTG GTGGCCCTGG GGCCATTGCC TTCCCGATTG CCGCGTTACT GTGGTGTGCC
TGGACCTACT CACCGTTCCT GGTTTCATTG CTGACGCTCA CGGCCGGCAG TACGCTGATT
GTGGCTGTGG CGCAAAACCT CATGCATTTC AGCGTGCCGC AGAGCGAACC TGGGGTTACC
ACGCTGATGT CGGCGCGCCT GGGCATCGCC ATGCTGGTGC TCGGGCCGCT GGTGGTGGCC
TGCGTCAGCC AGGCCAATCG TAGCCTCATG GCCCGCCTGG CGCACCAGGC CACCGTCGAT
CACCTCACCG GTGTGCTCAC CCGCAGCGCC TTCACACGCC GCGCCAACGC GCTGCTGGAG
AGCCGCCAAC AGCACGCCCA GGCGCTGCCG CTGACCCTGA TGATGCTGGA CATCGACCAC
TTCAAGTCAA TCAACGATGC CCACGGCCAT GCAGTCGGTG ACCAGGTGCT GCGCCAATTC
GCCAGCACCC TTCAGGACCA GCTGCACAAC GATGAGCTGA TAGCACGCCT GGGTGGCGAA
GAATTCGTTG TCATCCTGCC CGGACTTGCG CCAGAGCGGG CCAACTTCAT CGCCGAACGC
CTGCGCCGCG CCATCCAAGA CCTGCACGTG GTACAGGCCG ACCAGCGCCT GCAGATTACC
GTGAGTATCG GTGTGGCAGG CTGCGACGCA GACATGCCGG CCCCCAGCCT CGACGAACTG
CTGGCGAGTG CCGACCAGGC GCTGTACCGG GCCAAGGCCC GGGGCCGCAA CCGCGTCGAA
CAGGCCGAAG CACAGCGCCT GGTGATCTGA
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| Protein sequence | MVFPAQSRVL PYVVVLGVTF ALTLGGILAR PIESLSLFWP VNAVLAGVLL RYPRQATFTG
FCLVWLAMVG ADLLCGSAWG PALWFNLCNL GVVVTLWQLM SRLPRMHRRM RSPRGVLSVF
AACAAAAMVA ASMAAVMAAP WFEQSLRATW LAWFSEQFST GVLVLPVLLT APSVRALVRG
GAQPIRLAPL LVLLASLAFS IAFGGPGAIA FPIAALLWCA WTYSPFLVSL LTLTAGSTLI
VAVAQNLMHF SVPQSEPGVT TLMSARLGIA MLVLGPLVVA CVSQANRSLM ARLAHQATVD
HLTGVLTRSA FTRRANALLE SRQQHAQALP LTLMMLDIDH FKSINDAHGH AVGDQVLRQF
ASTLQDQLHN DELIARLGGE EFVVILPGLA PERANFIAER LRRAIQDLHV VQADQRLQIT
VSIGVAGCDA DMPAPSLDEL LASADQALYR AKARGRNRVE QAEAQRLVI
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