| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1880 |
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| Symbol | |
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| ID | 5194855 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 2153640 |
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| End bp | 2155250 |
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| Gene Length | 1611 bp |
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| Protein Length | 536 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640586344 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001267212 |
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| Protein GI | 148547110 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.70178 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGACTG TATTCCCGCC GCTGCGTATG GCTTTGCTGG GCGCAGCGCT GCTGCTCGGC
CCGCTCGCTG TGGTGCAGGC GAAAACCCCT GGCGACCAGT TGATCGTCGG CATGAGCATG
GTCAACCTGT TCTCCATCGA CCCGGCCAAC GCGCCCGGCC TGGATGCCTC TGGCATCAAT
GCCAACCTTT ACGACACGCT CATCAAGCGC GACCAGGGCA ACCCGGACAA GCACCTGCCA
CAACTGGCTG AACGCTGGGA CGTCAGCGAA GACGGCAAGC AGATCACCTT CCACCTGCGC
GGTGATGTCC TGTTCCATTC CGGCAACCCG CTCACTGCCG AAGATGTGGC CTGGTCACTG
TACCGGGTGA TGAAGCTCAA CTATGGCCTG GCTACCACCT GGAAGGCCTA CGGCTACAGT
GTCGAAAACA TTCAAAAGCT GATCCGTGCG ACCGATAGCC ATACCTTGGT GATCGACCTG
CCGCAGCCGA CCGACCCGTT GCTGGTGATC GACTCGCTGG CTGTGTCCCC CAGCGCTGTC
GTGGTCGACC GCCAGCAAGT GCTCAAGCAT GAGAAGAACG GTGACCTGGG CGCGGCCTGG
CTGGTCACCA ATGAGGCAGG CAGCGGGCCG TTCACCCTGA CCAAGTGGAG CGCCAACGAT
GCGCTGGTGA TGACCCGTTT CGACGGGTAC TGGGCAGGCC CGGCGAAGAT GAAGCGAGTG
CTGGTCCGCC ACATGACCGA GTCGCAGTCA CTGCGCCTGA TGCTCGAACG CGGTGACCTG
GACCTGGCCT ACGGTATGGC TGCGCCGGAT ATCAAGGCCA TCGAGAGTTC CGACACACTT
CAGGTGCAAG CGTTGCAGCG CGGCACCCTG TACTACGTGG CGATGAGCAT GAAGCAGCCG
GAGTTTGCCA ACCGCAAAGT CCGTGAAGCG GTGCGTAACC TGATCGACTA CCAGGGCCTG
GACCAGCAGG TGATGCCGCA TTACGGCAAG CTCAACCAGC AGCCGATGCA GCTTGGGCTC
GAGGCCCGGT TGCCCGACCC GGGCTACAAG CTGGATGTCG CCAAAGCCAA GGCACTGCTG
GCAGAGGCGG GCTACCCACA AGGTTTCAAT ACAACCATTC GCACGCTGTC CGAACCTCCC
TTCATTGATA TCGCTGCACG TATGCAGTCG ACCCTGGCTG AAGGTGGCAT CAAGGCCACT
ATCGTCACCG GTACCGGCAA CCAGGTGTAT GGCGCCATGC GCGCGCGCAA CTTTGAGATG
ATCGTGGCGC GGGGCGCCGA GCGTTATCCG CACCCGTATT TCAGCCTGCG CACCTTCGTC
TACAACCCCG ACAACAGTGA CAGTGCTGGC CTGCCCAACT TCCAGGGCTG GCGAGCGTCG
TTCTTCAGCC CCCCGCTGAA TGACCTGATC GACCGGGTGG GGATCGAGCG CGATGCGGCC
AAACGCCTGG CCATGTACCA GCAGGCGCAG AAACTGTACG ACGACGAGGT GGGGCCGATC
ATGATGATTT CGCAGATGAC CGACACCGCC GTAAGCGCAG CCGACGTCAA GGGTTTCACT
GGCGACGACG CCGAGGCCAC CCGCTACCTG GGCGTCTACA AGCAACGTTG A
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| Protein sequence | MKTVFPPLRM ALLGAALLLG PLAVVQAKTP GDQLIVGMSM VNLFSIDPAN APGLDASGIN
ANLYDTLIKR DQGNPDKHLP QLAERWDVSE DGKQITFHLR GDVLFHSGNP LTAEDVAWSL
YRVMKLNYGL ATTWKAYGYS VENIQKLIRA TDSHTLVIDL PQPTDPLLVI DSLAVSPSAV
VVDRQQVLKH EKNGDLGAAW LVTNEAGSGP FTLTKWSAND ALVMTRFDGY WAGPAKMKRV
LVRHMTESQS LRLMLERGDL DLAYGMAAPD IKAIESSDTL QVQALQRGTL YYVAMSMKQP
EFANRKVREA VRNLIDYQGL DQQVMPHYGK LNQQPMQLGL EARLPDPGYK LDVAKAKALL
AEAGYPQGFN TTIRTLSEPP FIDIAARMQS TLAEGGIKAT IVTGTGNQVY GAMRARNFEM
IVARGAERYP HPYFSLRTFV YNPDNSDSAG LPNFQGWRAS FFSPPLNDLI DRVGIERDAA
KRLAMYQQAQ KLYDDEVGPI MMISQMTDTA VSAADVKGFT GDDAEATRYL GVYKQR
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