| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1848 |
|---|
| Symbol | |
|---|
| ID | 5193794 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 2119303 |
|---|
| End bp | 2120646 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640586316 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001267184 |
|---|
| Protein GI | 148547082 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0276958 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATACCT CTATATCGAG CCCTGTCGAA AGTGACCTCG ATCACATGGA TCATGACGAG
AAGAAATCCA TGAAAAATGT TGTGGCCGGA AGCCTGTTCG GAACAGCATT AGAGACCTAC
GACCTCTACC TTTATGGCAC CGCAGCTGCC CTTATTTTTG GGCCTCTGTT TTTTCCAGGG
ACTGACGAAA CAGTTTCCCG ACTGGCCTCT CTTGCGTCAT TCGCAATTTC TTTCGTGGCG
CGTCCACTAG GGTCGCTTGT ACTTGGTCAT TTCGGGGACA GGATTGGCCG TAAAAAGCTG
CTGTACCTCA CGCTCATCAT TATGGGCTTG AGCACTGTAG GTATTGGTCT TTTGCCTACC
TATGCCAGCA TTGGCATTTG GGCACCTATC ATGCTCTGCG TGCTCCGCTT CATCCAAGGC
TTCGCTTTTG CGGGTGAGTA CAGTGGCGCT GTGCTGATGC TCTTAGAGCA TGCCCCAAGA
AGAAGGAGGG GATTCTATGC GGCGATCAAT AACATCGGCC CAGTCTTTGG TTTCATCGCG
TCAGCTGGCA TGCTTTTGAT CGTCAGTGCC TTGCTGTCTA AAGAGGATTT CACCGCTTGG
GGATGGCGTA TTCCTTTCAT CGCCAGCCTT GCGTTGCTGA TAGTAGGGGT GTTTGTCCGC
TCCAAAGTCC CCGAGTCTCC AGTGTTCGAA AAGACTGCTG AGAAGAGGGC TGCCACGCCT
GGCGACTCGC AATCACCAGC GCTTCGCTTG TTCACTCGCT ATCCTAAGCA ACTGATGTTG
GTTGCAGGCG CCAACATCTG CCATTTCTCG ACTTTCTACC TCTTCACCGT ATTTGCCCTG
AGCTATGGCC AGCGAGAGCT AGGCCTGTCT AATGCATTCG TGCTGTCAGT CGCAATGGTA
GCAATTTGTA CTCACCTGGT AGTTGTACCT TTTGCAGGGG CGATGGCAGA TCGTATTGGC
CGCCGTACCA TGATGCTGAT TGGTTTTGTC GTGACGGCAC TTGCCGCCTT TCCTTTCTGG
CACCTCTTTT CAACCGGCGA GTTCTGGCCG ATGGTCGCTG GATCATGCCT GTTCATGACC
GGATATGGCT TGGTATACGG TGCAGTGCCA TCGTTCACTG GCGAAGCTTT CGGGCCTAGC
GCTCGCTTCA CTGGTTTCGC GATGTCTACT AACGTTGGTG GAATTGTAGG CGGTGGTACT
GCTCCAATTG TAGGGGCATT CCTCCTCAGC CATTACGGTA CGCCTTACGC GATCTCGATG
CTCACGATAG CTCTCGCGGC GTTCTCTGGA CTCTGTGTCT ACCTGTCTGC TGAGACAAAA
GACGTGGACA TCGTCGACGA GTGA
|
|---|
| Protein sequence | MHTSISSPVE SDLDHMDHDE KKSMKNVVAG SLFGTALETY DLYLYGTAAA LIFGPLFFPG
TDETVSRLAS LASFAISFVA RPLGSLVLGH FGDRIGRKKL LYLTLIIMGL STVGIGLLPT
YASIGIWAPI MLCVLRFIQG FAFAGEYSGA VLMLLEHAPR RRRGFYAAIN NIGPVFGFIA
SAGMLLIVSA LLSKEDFTAW GWRIPFIASL ALLIVGVFVR SKVPESPVFE KTAEKRAATP
GDSQSPALRL FTRYPKQLML VAGANICHFS TFYLFTVFAL SYGQRELGLS NAFVLSVAMV
AICTHLVVVP FAGAMADRIG RRTMMLIGFV VTALAAFPFW HLFSTGEFWP MVAGSCLFMT
GYGLVYGAVP SFTGEAFGPS ARFTGFAMST NVGGIVGGGT APIVGAFLLS HYGTPYAISM
LTIALAAFSG LCVYLSAETK DVDIVDE
|
|---|
| |