Gene Pput_1833 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_1833 
Symbol 
ID5191139 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp2104854 
End bp2106134 
Gene Length1281 bp 
Protein Length426 aa 
Translation table11 
GC content63% 
IMG OID640586301 
Productseryl-tRNA synthetase 
Protein accessionYP_001267170 
Protein GI148547068 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0172] Seryl-tRNA synthetase 
TIGRFAM ID[TIGR00414] seryl-tRNA synthetase 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000844174 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCTCGATT CCAAACTGTT ACGCGGCCAA CTTCAGGAAG TGGCGGATCG CCTGGCCTCC 
CGTGGCTTCA GCCTGGATGT CGCGCGCATC GAATCACTGG AAGAGCGCCG CAAGGCGGTG
CAGACCCGCA CCGAACAGCT GCAGGCTGAG CGTAACGCCC GTTCCAAGTC CATCGGCCAG
GCCAAGGCCA AGGGTGAAGA CATCGCCCCG CTGATGGCGG ACGTCGAGCG CATGGCCAAC
GAACTGGCTG CCGGCAAGGC TGAGCTGGAC GCCATTCAGG CCGAACTGGA TAGCATCTTG
CTGACCATTC CCAACCTGCC GGACGCCAGC GTGCCGGTCG GCGCCAGTGA AGACGACAAC
GTCGAAGTGC GCCGTTGGGG CACGCCGAAG GCGTTCGACT TCGAAATCAA GGACCATGTG
GCCCTCGGTG AAATCAGCCG TGGCCTGGAC TTCGAAGCGG CTGCCAAGCT GTCCGGTGCC
CGTTTTGCTG TGCTGCGTGG TCCGGTTGCC CGTCTGCACC GCGCCCTGGC GCAGTTCATG
ATCAACCTGC ACACCGGCGA ACATGGCTAC GAGGAACACT ACACCCCGTA CATGGTGCAG
GCGCCCGCGC TGCAGGGCAC TGGCCAGTTG CCGAAGTTTG AGGAAGACCT GTTCAAGATC
ACCCGCGAAG GCGAGGCTGA CTTCTACCTG ATCCCGACCG CCGAAGTGTC GCTGACCAAC
CTGGTGGCGG GTGAAATCCT CGACGCCAAG CAGCTGCCGC TCAAACTGGT TGCCCACACC
CCTTGCTTCC GCAGCGAAGC CGGCGCTTCT GGCCGTGACA CCCGCGGCAT GATCCGCCAG
CACCAGTTCG ACAAAGTCGA GATGGTGCAG GTGGTAGAGC CGTCCAAGTC GATGGAAGCC
CTGGAAGGCC TGACCGCCAA TGCCGAGCGC GTGCTGCAGT TGCTTGAGTT GCCATACCGC
GTGCTGGCCC TGTGCACTGG CGACATGGGC TTTGGTGCGG TGAAAACCTA CGACCTGGAA
GTGTGGGTGC CAAGCCAGGA CAAGTACCGC GAAATCAGCT CGTGCTCCAA CTGTGGTGAC
TTCCAGGCGC GCCGCATGCA GGCTCGCTGG CGTAACCCGG AAACCGGCAA GCCAGAGCTG
GTACACACGC TCAACGGCTC CGGTCTGGCC GTAGGCCGTA CCCTGGTGGC TGTGCTGGAG
AACTACCAGC AGGCCGACGG TTCGATCCTG GTGCCGGAAG TGCTGAAGCC TTACATGGGC
GGCGTCGAGG TCATCCGCTA A
 
Protein sequence
MLDSKLLRGQ LQEVADRLAS RGFSLDVARI ESLEERRKAV QTRTEQLQAE RNARSKSIGQ 
AKAKGEDIAP LMADVERMAN ELAAGKAELD AIQAELDSIL LTIPNLPDAS VPVGASEDDN
VEVRRWGTPK AFDFEIKDHV ALGEISRGLD FEAAAKLSGA RFAVLRGPVA RLHRALAQFM
INLHTGEHGY EEHYTPYMVQ APALQGTGQL PKFEEDLFKI TREGEADFYL IPTAEVSLTN
LVAGEILDAK QLPLKLVAHT PCFRSEAGAS GRDTRGMIRQ HQFDKVEMVQ VVEPSKSMEA
LEGLTANAER VLQLLELPYR VLALCTGDMG FGAVKTYDLE VWVPSQDKYR EISSCSNCGD
FQARRMQARW RNPETGKPEL VHTLNGSGLA VGRTLVAVLE NYQQADGSIL VPEVLKPYMG
GVEVIR