| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1823 |
|---|
| Symbol | |
|---|
| ID | 5194351 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 2094515 |
|---|
| End bp | 2094781 |
|---|
| Gene Length | 267 bp |
|---|
| Protein Length | 88 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640586291 |
|---|
| Product | cold-shock DNA-binding domain-containing protein |
|---|
| Protein accession | YP_001267160 |
|---|
| Protein GI | 148547058 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1278] Cold shock proteins |
|---|
| TIGRFAM ID | [TIGR02381] cold shock domain protein CspD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.565643 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0615675 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGCG GTAAAGTCAA GTGGTTCAAC AATGCCAAGG GCTATGGATT CATCAATGAG
GAAGGTAAAT CCGATGACCT GTTCGCCCAT TATTCCGCCA TCCGAATGGA CGGATACAAG
ACCCTGAAGG CTGGCCAGGC CGTGGTATTC GACATCGTCC AGGGCCCCAA AGGCTTGCAC
GCCGTTGAAA TCAAAGATGC TGCGGCCGCC GCGGCAGAGG CTGCCAGACC CGTGGGTGAG
CCGCAAAGCG AAACTGCAAA AGCCTGA
|
|---|
| Protein sequence | MASGKVKWFN NAKGYGFINE EGKSDDLFAH YSAIRMDGYK TLKAGQAVVF DIVQGPKGLH
AVEIKDAAAA AAEAARPVGE PQSETAKA
|
|---|
| |