| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1822 |
|---|
| Symbol | |
|---|
| ID | 5194350 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 2093187 |
|---|
| End bp | 2094443 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640586290 |
|---|
| Product | isocitrate dehydrogenase, NADP-dependent |
|---|
| Protein accession | YP_001267159 |
|---|
| Protein GI | 148547057 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0538] Isocitrate dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00183] isocitrate dehydrogenase, NADP-dependent, prokaryotic type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.556835 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.083178 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGATACC AGAAAATCAA GGTTCCGACC GACGGCACCA AAATTACCGT CAATGCAGAC
CATTCGCTTA ACGTGCCTGA TCATCCGATC ATTCCTTACA TTGAAGGCGA CGGGATCGGC
GTCGATGTCT CGCCGGTGAT GATCAAGGTG GTCGATGCCG CCGTGCACAA GGCCTACGGC
GGCAAGCGCA AGATCGCCTG GATGGAGGTA TACGCTGGCG AGAAAGCCAC CCAGGTGTAT
GACCAGGATA CCTGGTTGCC GCAGGAAACC CTCGATGCCG TGCGTGATTA CGTGGTGTCG
ATCAAGGGCC CGCTGACCAC CCCCGTCGGT GGCGGCATCC GCTCACTCAA CGTGGCCCTG
CGCCAGCAAC TGGACCTGTA TGTATGCCTG CGGCCGGTGC TGTGGTTCCA GGGTGTACCG
AGCCCGGTGA AAAAGCCGGG CGACGTCGAC ATGGTGATCT TCCGCGAGAA CTCCGAAGAC
ATCTATGCCG GCATCGAGTG GAAGGCCGGC TCGCCCGAGG CGAACAAGGT GATCAAGTTT
CTCAAGGAGG AAATGGGGGT CACCAAGATC CGCTTCGACC AGGATTGCGG TATCGGCGTC
AAACCGGTGT CGAAGGAAGG TACCAAGCGT CTGGTGCGCA AGGCCCTGCA ATATGTGGTG
GATAACGACC GCGAATCACT GACCCTGGTG CACAAGGGCA ACATCATGAA ATTCACCGAG
GGTGCCTTCA AGGACTGGGG GTACGAGGTG GCGCGTGACG AGTTCGGCGC TGAGCTGCTC
GATGGCGGCC CTTGGATGAA GTTCAAGAAC CCCAAGACCG GTCGCGAGGT CATCGTCAAG
GACGCCATCG CCGACGCCAT GCTGCAGCAG ATCCTGCTGC GCCCTGCCGA GTACGATGTG
ATCGCCACCC TCAACCTCAA TGGTGACTAC CTGTCCGATG CCCTGGCGGC GGAAGTGGGC
GGTATCGGCA TTGCCCCGGG CGCCAACCTG TCCGACACCG TGGCCATGTT CGAGGCCACT
CACGGCACGG CGCCCAAGTA TGCCGGGCAG GACAAGGTCA ACCCGGGCTC GGTGATCCTC
TCGGCAGAGA TGATGCTGCG CCACATGGGT TGGACCGAGG CCGCCGACCT GATCATCAAG
GGCACCAATG GCGCCATTGC GGCCAAGACC GTGACCTACG ATTTCGAGCG GTTGATGGAA
GGCGCCAAGC TGGTAAGCAG CTCAGGCTTT GGCGATGAAA TGATCAAACA CATGTAA
|
|---|
| Protein sequence | MGYQKIKVPT DGTKITVNAD HSLNVPDHPI IPYIEGDGIG VDVSPVMIKV VDAAVHKAYG
GKRKIAWMEV YAGEKATQVY DQDTWLPQET LDAVRDYVVS IKGPLTTPVG GGIRSLNVAL
RQQLDLYVCL RPVLWFQGVP SPVKKPGDVD MVIFRENSED IYAGIEWKAG SPEANKVIKF
LKEEMGVTKI RFDQDCGIGV KPVSKEGTKR LVRKALQYVV DNDRESLTLV HKGNIMKFTE
GAFKDWGYEV ARDEFGAELL DGGPWMKFKN PKTGREVIVK DAIADAMLQQ ILLRPAEYDV
IATLNLNGDY LSDALAAEVG GIGIAPGANL SDTVAMFEAT HGTAPKYAGQ DKVNPGSVIL
SAEMMLRHMG WTEAADLIIK GTNGAIAAKT VTYDFERLME GAKLVSSSGF GDEMIKHM
|
|---|
| |