| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1813 |
|---|
| Symbol | |
|---|
| ID | 5193708 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 2081243 |
|---|
| End bp | 2082532 |
|---|
| Gene Length | 1290 bp |
|---|
| Protein Length | 429 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640586281 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_001267150 |
|---|
| Protein GI | 148547048 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00738573 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.652895 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAAC AATCCGCCCA GCACGTCGCC AGTTACTACG CCCAGACCTA CCCCGCCAAC
ATCCCATTAC GCCCTACCCT GCAAGGCACT CAGGACACCG ATGTGCTGAT CATCGGCGCC
GGTTTCAGCG GCCTGCACAC TGCCCTGCGG CTGACCCAGG CCGGCAAGCG CGTAACGCTG
CTGGAAGCCA GCCGGGTTGC CTGGGCGGCC TCCGGACGCA ACGGTGGCCA GGCCCTGTTG
GGCTGGTCGT GCGACATGCC GCCGCTGGAG CAGGCCCTTG GCATCGAACG CACCCAACGG
CTATGGGCCA GCATGTGCTG GGCCGCCGAC GAGATGCGCG AATTGCCCCA ACGCCACGGT
TTCGACATCG ACTACCGGCA GGGCAGCCTG TGGACTGCGG TATTGCCACG CCGGGTGAAA
ATGCTCGAAG AGGCCCTGCA TGATGCCGAG CATAAATGGG GTTACGACGC CCTGCGCCTG
ATTGGCCGTG ACGAGTTGCC GCAATGGATC GACAGCCCGC GCTACCAGGC CGCGCTGTAC
GACGCCAAAG GTGCCCACCT CAACCCGCTG AAACTGGCAC AGGGCCTGGC CAATACCATC
GAGGCTGCCG GCGGGCAAAT CTACGAACAG AGCCAGGTGC TCAGCTACCA GCAGGCTCGC
GACGGCTATG TCGCCCGTAC CGACCGTGGC GAAGTTCGCT GCCAGGTATT GGTGCTGGCC
TGCAACGCCT ACATCGACCG CCTTGACCGC AGCCTGTCGC GTCGCCTGTT ACCAGTCGGT
TCCTACCAGG TCGCCACTGC GCCTCTGGAT GCCGACTTCG CCCATTCGTT ACTACCTCGC
AACAGTTGTG TGATCGACAA CCAGTTCGTA CCCGACTACT TTCGCCTCAC CCCGGACCAC
CGCCTGCTGT TCGGTGGCGG CTGCACTTAC CTGGGCGGCA TTCCCAAGGA CGTCGCCAGC
GCCACCCGCC CGTACCTGGA GCGGGTATTC CCGCAACTGG CCGGGGTGGC CATCGACTAT
GCCTGGGGTG GCCACATCGA TTGCAGCATC AAGCGCACCC CGGACGTCGG CCGCGAGGGC
CAGCGCTACT GGCTGCAGGG TTTCTCCGGC CATGGTGTAC TGCCGACCCT GGCGGCGGCG
CGTGCGGTCA GCGATGCCAT TCTCGGCGAT GAAAACCTGT TGGCGCTGTA CCAAGGCATC
GACAACGGCC GTTTCCCCGG TGGCGACCTG CTGGCTGCAC CTTTGGAAGC TGCGGCAAAG
GCCTGGTACC GCATGCGCGA CCGCGTCTGA
|
|---|
| Protein sequence | MFKQSAQHVA SYYAQTYPAN IPLRPTLQGT QDTDVLIIGA GFSGLHTALR LTQAGKRVTL
LEASRVAWAA SGRNGGQALL GWSCDMPPLE QALGIERTQR LWASMCWAAD EMRELPQRHG
FDIDYRQGSL WTAVLPRRVK MLEEALHDAE HKWGYDALRL IGRDELPQWI DSPRYQAALY
DAKGAHLNPL KLAQGLANTI EAAGGQIYEQ SQVLSYQQAR DGYVARTDRG EVRCQVLVLA
CNAYIDRLDR SLSRRLLPVG SYQVATAPLD ADFAHSLLPR NSCVIDNQFV PDYFRLTPDH
RLLFGGGCTY LGGIPKDVAS ATRPYLERVF PQLAGVAIDY AWGGHIDCSI KRTPDVGREG
QRYWLQGFSG HGVLPTLAAA RAVSDAILGD ENLLALYQGI DNGRFPGGDL LAAPLEAAAK
AWYRMRDRV
|
|---|
| |