| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1807 |
|---|
| Symbol | nhaB |
|---|
| ID | 5193937 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 2074760 |
|---|
| End bp | 2076262 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640586275 |
|---|
| Product | sodium/proton antiporter |
|---|
| Protein accession | YP_001267144 |
|---|
| Protein GI | 148547042 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3067] Na+/H+ antiporter |
|---|
| TIGRFAM ID | [TIGR00774] Na+/H+ antiporter NhaB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.933013 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCGCT CCCTGACCGG CGCCCTCGCT CACGGTTTCC TGGGCCAGTC GCCGCTTTGG
TACAAAGCGG TCATCTGCCT GTTCCTGGTG CTCAATCCAC TTCTACTGGC AACCATTGGC
CCGGCTGCAG CCGGGTGGGC GCTGGTAATC GAGTTCATCT TCACCCTGGG CATGGCGCTG
AAGTGCTACC CGCTGATGCC CGGGGGATTG TTGCTGATCG AAGCCCTGCT GTTGCAGATG
ACCACGCCGC AGGCACTGTA CGAAGAACTG CAGCACAACT TCCCGGTAAT CCTGCTGCTG
ATGTTCATGG TCGCCGGTAT CCATTTCATG AAGGAACTGC TGCTGTTCCT GTTCTCGCGC
ATTCTGCTGG GTGTGCGCTC GAAAGCCATG CTGTCGCTAC TGTTCTGCGT ACTGTCGGCA
TTCCTTTCGG CGTTTCTCGA TGCGCTGACC GTGACGGCCG TGATCATCAG CGCCGCGGTC
GGCTTTTATG CGGTCTACCA TCGCGTGGCG TCCGGCGCCA ACCCGCGTGA AGACAGCGCA
CTGGACAGCG ACCAGCAAGT GGCGCAGTTA CACCGTGACG ACCTGAACCA GTTCCGCGCG
TTCCTGCGCA GCTTGCTGAT GCACGGCGCA GTGGGTACCG CCCTGGGTGG CGTGTGCACG
CTGGTAGGCG AGCCGCAGAA CCTGCTGATC GGCCACGAGA TGGGCTGGCA CTTCGCTGAC
TTCCTCCTCA AGGTGGCGCC CGTGTCGATA CCGGTGCTGG GTGCCGGCCT GCTGACCTGC
GTGTTGCTGG AGAAGCTGCG CCTGTTCGGC TACGGCACGC TGATGCCTGA GACAGTGCGC
CAGGTACTGG CTGCCTATGC CGCCGAGGAC GATGCCGCAC GTACCCAGGC CCAGCGCATC
GCGCTGTGGG TACAAGGGCT TGCTGCCCTG ATCCTGATCA TCTGCCTGGG GCTGCATGTG
GCCGAGGTCG GCCTGATCGG CCTGATGGTG ATCGTACTGA TCACGGCCTT CACCGGCATC
ACCGACGAGC ACCGCCTGGG CCGTGCCTTC CAGGACGCCA TGCCATTCAC TTCGCTGTTG
GTGGTGTTCT TTGCCGTGGT CGCGGTGATT CATCAGCAAC AATTGTTCAG CCCATTGATC
AGCTGGGTGC TGACGCTGCC GGCCGAACAG CAACCGGGCA TGCTGTATCT GGCCAACGGT
TTGCTGTCGG CGATCAGCGA CAATGTGTTC GTTGCCACCA TCTACATCAC CGAAGTGAAG
CAGGCATTTC TCAACGGCAG CATGAGCCGC GAGCATTTCG AAACACTGGC GGTGGCGATC
AACACCGGCA CCAACCTGCC AAGCGTGGCG ACGCCGAACG GGCAGGCGGC GTTCCTGTTC
CTGCTGACCT CGGCCATTGC GCCGCTGATC CGGCTGTCGT ATGGACGGAT GGTGTGGATG
GCGCTGCCCT ATACCGTGGT GATGGGCGGG TTGGGATGGT GGGCGGTGAC GTACTGGCTG
TGA
|
|---|
| Protein sequence | MSRSLTGALA HGFLGQSPLW YKAVICLFLV LNPLLLATIG PAAAGWALVI EFIFTLGMAL
KCYPLMPGGL LLIEALLLQM TTPQALYEEL QHNFPVILLL MFMVAGIHFM KELLLFLFSR
ILLGVRSKAM LSLLFCVLSA FLSAFLDALT VTAVIISAAV GFYAVYHRVA SGANPREDSA
LDSDQQVAQL HRDDLNQFRA FLRSLLMHGA VGTALGGVCT LVGEPQNLLI GHEMGWHFAD
FLLKVAPVSI PVLGAGLLTC VLLEKLRLFG YGTLMPETVR QVLAAYAAED DAARTQAQRI
ALWVQGLAAL ILIICLGLHV AEVGLIGLMV IVLITAFTGI TDEHRLGRAF QDAMPFTSLL
VVFFAVVAVI HQQQLFSPLI SWVLTLPAEQ QPGMLYLANG LLSAISDNVF VATIYITEVK
QAFLNGSMSR EHFETLAVAI NTGTNLPSVA TPNGQAAFLF LLTSAIAPLI RLSYGRMVWM
ALPYTVVMGG LGWWAVTYWL
|
|---|
| |