| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1784 |
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| Symbol | |
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| ID | 5192542 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 2040179 |
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| End bp | 2043499 |
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| Gene Length | 3321 bp |
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| Protein Length | 1106 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640586252 |
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| Product | trehalose synthase |
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| Protein accession | YP_001267121 |
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| Protein GI | 148547019 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases
[COG3281] Uncharacterized protein, probably involved in trehalose biosynthesis |
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| TIGRFAM ID | [TIGR02456] trehalose synthase
[TIGR02457] trehalose synthase-fused probable maltokinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0687531 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.178352 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAAGC GTTCCCGCCC GGCAGCCTTC ATCGACGACC CGCTTTGGTA CAAGGATGCT
GTCATCTATC AGTTGCACAT CAAGTCATTC TTCGACTCGA ACAACGATGG CATCGGTGAT
TTCGCCGGCC TGATCAGCAA GCTCGACTAT ATCGCCGAGC TGGGTGTCAA CACCTTGTGG
CTGCTGCCGT TCTATCCCTC GCCACGCCGT GACGACGGCT ACGACATCGC CGAATACAAG
GCCGTGCACC CCGACTACGG CAGCATGGCC GACGCCCGCC GTTTCATCGC CGAGGCCCAC
AAGCGCGGCC TGCGGGTGAT CACCGAGCTG GTCATCAACC ACACCAGCGA CCAGCACCCG
TGGTTCCAGC GCGCCCGCCA CGCCAAGCGC GGCAGCAAGG CGCGCGAGTT TTACGTGTGG
TCGGACGACG ACCAGAAGTA CGACGGCACG CGCATCATCT TCCTCGACAC CGAAAAGTCC
AACTGGACCT GGGACCCGGT CGCCGGCCAG TACTTCTGGC ACCGGTTCTA TTCCCACCAG
CCGGACCTCA ATTTCGACAA CCCGCAGGTG CTCAAGGCGG TGATCGGCGT CATGCGCTTC
TGGCTCGACC TGGGTGTAGA TGGCCTGCGG CTGGACGCGA TCCCTTACCT GATCGAGCGC
GACGGCACCA ACAACGAAAA CCTCGCCGAA ACCCACGACG TGCTCAAGGC GATCCGCGCC
GAGATCGACG CCAACTACCC CGATCGCATG CTGCTGGCCG AAGCCAACCA GTGGCCGGAA
GACACGCGCC CGTACTTCGG TGAAGGCGAC GGCGACGAAT GCCATATGGC CTTCCACTTT
CCGTTGATGC CGCGCATGTA CATGGCCCTG GCCATGGAAG ACCGCTTCCC GATCACCGAT
ATCCTGCGCC AGACCCCGGA AATCCCGGCC AACTGCCAGT GGGCGATCTT TTTGCGCAAC
CATGATGAAC TGACCCTGGA AATGGTCACC GACCGCGAGC GCGACTACCT GTGGAACTAC
TACGCCGAAG ACCGCCGCGC GCGCATCAAC CTGGGCATTC GCCGGCGCCT GGCGCCCCTG
CTGCAGCGTG ACCGTCGGCG CATAGAGCTG CTGACCAGCC TGCTGTTGTC GATGCCCGGC
ACGCCAACCC TGTATTACGG CGACGAACTG GGCATGGGCG ACAATATCTA TCTGGGTGAC
CGTGATGGCG TTCGCACACC CATGCAGTGG TCGCCAGACC GCAACGGCGG TTTTTCCCGC
GCCGACCCGC AACGCCTGGT GCTGCCGCCG ATCATGGACC CGCTCTACGG TTACCAGACC
GTCAACGTCG AGGCGCAAAG CCACGATCCG CATTCGCTGC TGAACTGGAC CCGGCGCATG
CTGGCGGTGC GTAAGCAGCA GAAGGCCTTT GGCCGCGGCA GCCTGCGCAC CCTCACGCCC
AGCAACCGGC GCATCCTTGC CTATATCCGC GAGTACACCG ATGCTGACGG CAATACCGAG
GTCATCCTCT GCGTGGCCAA CGTGTCCCGC GCCGCCCAGG CTGCCGAACT CGAATTGTCA
CAATACGCCG ACAAAGTACC GGTGGAGATG CTGGGCGGCA GCGCGTTCCC GCCAATCGGC
CAACTGCCGT TTCTGCTGAC CTTGCCACCT TATGCGTTCT ACTGGTTCCT GCTGGCCAGC
CGCGATCGCA TGCCCAGCTG GCACATCCAG CCCACCGAGG GGTTACCCGA ATTGACCACA
TTGGTACTGC GCAAGCGCAT GGAAGAACTG CTGCAAGCCC CCGCAAGCGA TACGCTGCAA
AGCACCATCC TGCCGCAGTA CCTGCCCAAA CGCCGCTGGT TCGCCGGCAA GGAAGGGCCG
ATCGATGCCG TGCGCCTGTG TTACGGCGTG CGTTTCGGCA CCGCCACCAC GCCGGTGTTG
CTCAGCGAAA TCGAGGTACT CAGTGACGGC ACGGCCACCT GCTACCAGCT GCCGTTCGGC
CTGCTGCGTG AGGAACAGAT CCACACCGCG CTGCCGCAGC AGCTGGCGTT GTCGCGGGTG
CGCCGTACCC ACCAGGTTGG CTTGATCACA GACGCCTTCG TCCTTGAGCC GTTCATTCAC
GCTGTGATGC AAGCCTGCGA GGATGGACTG CGTCTGCCGT GCGGCGACGG TGAGGGTGAA
TTGCGCTTTG AATGCACAGA GCAGCTGGCC GGCCTGGCGC TCGACGAGGA GAGCGAAGTG
CGCTACCTCA GCGCCGAGCA GTCCAACAGT TCGGTGGTCA TCGGCGATCG CGTGGTGCTT
AAACTGATCC GCCGGGTCAA CCCGGGTATC CATCCAGAGC TGGAAATGAG TGCCTACCTG
ACCGCCGCCG GCTTTGCCAA CATCTCGCCG CTGCTGGCCT GGGTCAGCCG GGTGGACGAG
CAACACGCGC CGCACCTGCT GATGATTGCT CAGGGTTACC TGAGCAACCA GGGCGATGCC
TGGGGCTGGA CCCAGAACAC GCTGGAACGG GCCATCCGCG ACCAGATGGA GCCCACCCGC
AACGACGCCG AAGCGCACAC TGACGCATTG GCCGAACTCA GCGGCTTTGC CGCCTTGCTT
GGCCAGCGCC TGGGCGAGAT GCACCTGCTG CTGGCCGCAC CCACCGAAGA CCCGGCCTTC
CAGCCGCGCC CCAGCGATGC GCAGGACAGC GAGCGCTGGT GTGCACAGAT CAGCACCGAA
CTGACCCACG CCCTCGACCT GCTGGCGCAG CATCGCGACA CACTGGACAG CGACAGCCAG
TCCTTGGTCG ACGACCTGCA GCAACAGCGT GACGGCCTGG CCCAGCACAT CGACACCCTG
AGCAAGCAGG CTCAGGGTGG CCTGCTGATG CGTGTGCACG GCGACCTGCA CCTGGGCCAG
GTGCTCGTGG TGCAGGGGGA TGCCTACCTC ATCGATTTTG AAGGTGAACC CGCCCGGCCC
CTTGAAGAGC GCCGGGCAAA ACACAGCCCC TACAAGGATG TCAGCGGCGT GCTGCGATCC
TTCGACTATG CTGCTGCGAT GATCTTGCGC AGCGCGTCTG CGGTGGACCT TTCCGAGCCG
GCGCGGCAAG CCCGGCAGCG GGTTGCCCGG CAGTACCTGC ACCAGTCCCG GCATGCCTTT
GTCGAAGCCT ATGGGCTGGC CACCGCCGCC ATGCCTCACG CCTGGCAGCA CGCCGAGGGT
GAGCGCGCGG CGCTGGAATT GTTCTGCCTG GAAAAAGCCG CCTACGAGAT TACATACGAA
GCCGAAAACC GTCCGAGCTG GCTGGCCGTG CCTTTGCATG GTCTGCATGG ACTGATCAGT
ACCTGGGGAG AGTCAGAATG A
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| Protein sequence | MAKRSRPAAF IDDPLWYKDA VIYQLHIKSF FDSNNDGIGD FAGLISKLDY IAELGVNTLW
LLPFYPSPRR DDGYDIAEYK AVHPDYGSMA DARRFIAEAH KRGLRVITEL VINHTSDQHP
WFQRARHAKR GSKAREFYVW SDDDQKYDGT RIIFLDTEKS NWTWDPVAGQ YFWHRFYSHQ
PDLNFDNPQV LKAVIGVMRF WLDLGVDGLR LDAIPYLIER DGTNNENLAE THDVLKAIRA
EIDANYPDRM LLAEANQWPE DTRPYFGEGD GDECHMAFHF PLMPRMYMAL AMEDRFPITD
ILRQTPEIPA NCQWAIFLRN HDELTLEMVT DRERDYLWNY YAEDRRARIN LGIRRRLAPL
LQRDRRRIEL LTSLLLSMPG TPTLYYGDEL GMGDNIYLGD RDGVRTPMQW SPDRNGGFSR
ADPQRLVLPP IMDPLYGYQT VNVEAQSHDP HSLLNWTRRM LAVRKQQKAF GRGSLRTLTP
SNRRILAYIR EYTDADGNTE VILCVANVSR AAQAAELELS QYADKVPVEM LGGSAFPPIG
QLPFLLTLPP YAFYWFLLAS RDRMPSWHIQ PTEGLPELTT LVLRKRMEEL LQAPASDTLQ
STILPQYLPK RRWFAGKEGP IDAVRLCYGV RFGTATTPVL LSEIEVLSDG TATCYQLPFG
LLREEQIHTA LPQQLALSRV RRTHQVGLIT DAFVLEPFIH AVMQACEDGL RLPCGDGEGE
LRFECTEQLA GLALDEESEV RYLSAEQSNS SVVIGDRVVL KLIRRVNPGI HPELEMSAYL
TAAGFANISP LLAWVSRVDE QHAPHLLMIA QGYLSNQGDA WGWTQNTLER AIRDQMEPTR
NDAEAHTDAL AELSGFAALL GQRLGEMHLL LAAPTEDPAF QPRPSDAQDS ERWCAQISTE
LTHALDLLAQ HRDTLDSDSQ SLVDDLQQQR DGLAQHIDTL SKQAQGGLLM RVHGDLHLGQ
VLVVQGDAYL IDFEGEPARP LEERRAKHSP YKDVSGVLRS FDYAAAMILR SASAVDLSEP
ARQARQRVAR QYLHQSRHAF VEAYGLATAA MPHAWQHAEG ERAALELFCL EKAAYEITYE
AENRPSWLAV PLHGLHGLIS TWGESE
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