| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1783 |
|---|
| Symbol | |
|---|
| ID | 5192947 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 2038006 |
|---|
| End bp | 2040024 |
|---|
| Gene Length | 2019 bp |
|---|
| Protein Length | 672 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640586251 |
|---|
| Product | alpha amylase, catalytic region |
|---|
| Protein accession | YP_001267120 |
|---|
| Protein GI | 148547018 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00829372 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.075062 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACGAA ACGAGCCCTT TGAAAGCGTG CCCATGGCGA ACGATCACCC GGACCAGGCC
ATTAGCCTGG CCCAGGCGCT GTTGGCGCCA CGCATCGTGA TCGAAGACAC CCAACCCGTG
CTCGACGCCG GCAGCTTCGC CGCCAAGGCC GTCAGCGGCC AGCCCGTGAC AGTCAGCACC
AAGGCCTACA GCGACGGCCA CGACCGCCTG GCGGTGATGC TCAACTGGCG CCAGGCGCAC
AGCAGGCGCT GGCATTGCGT GTCGATGCAG GCGGCGGGCA ACGACCTGTG GCTGGCCGAA
TTCACCCCCA CCGAGCTGGG CCCGCACCGG TTCAGTATCG AGGCCTGGAT CGACCCGTTT
GCCACCTATT GCCACGACCT GGAGAAGAAG TACCACGCCG GCGTCGAGGT GAAACTGGAG
CTGGAAGAAG GCCGTTTGAT GCTGGGCAAA GGCATCGAGC TGTGCAGCGG CGCCCTGCGC
GAAGAGCTCG AGGCCGTGCA ACACCGCCTG GCCACCCTCA GTACCGATGA CCAGGTAGCC
GTCTTTCTCG ACCCGACCAC CGCCCGCCTG ATGGGCGAAG CCGAACACCG CAGCTACCTG
ACTCGCAGCC CTGAGTTTCC CCTTGATGTC GACCGCCCGG CCGCCCTGTT CGCCAGCTGG
TACGAGCTGT TCCCGCGCTC GATGACCGAC GACCCGCAGC GCCACGGCAC CTTCAACGAC
GTGCACGAAC GGCTGCCGAT GATCCGCGAC ATGGGCTTCG ACGTACTGTA CTTCCCGCCC
ATCCACCCCA TCGGCATGCA GCATCGCAAG GGCCGCAACA ACGCCCTCAA GGCCGAGCCG
GGCGACCCGG GCAGCCCTTA TGCCATCGGC AGCCCGGAAG GCGGCCACGA GGCCATTCAC
CCGCAACTGG GCAGCCGCGA TGACTTCCGC CGTCTGGTGG CCGCAGCGGC GGAACACGGC
CTGGAAATTG CCCTCGATTT CGCCATCCAG TGCTCCCAGG ACCACCCCTG GCTCAAGGAG
CACCCGGGCT GGTTCAGCTG GCGCCCGGAC GGCACCATCC GCTACGCTGA AAACCCGCCG
AAAAAGTACC AGGACATCGT CAACGTCGAT TTCTATGCGC CGGAGGCCGT GCCCTCGCTG
TGGCTGGCCC TGCGCGATGT GGTGGTCGGC TGGGTCGAGG AGGGCGTAAA GACTTTCCGC
GTCGACAACC CGCACACCAA GCCGCTGCCG TTCTGGCAAT GGCTCATCGC CAATGTGCGC
AGCCAGCACC CCGACGTCAT CTTCCTTGCC GAAGCCTTTA CCAAACCGGC GATGATGGCG
CGCCTGGGCA AGGTCGGCTA CGCACAGAGC TATACCTATT TCACCTGGCG CAACCACAAG
CAGGAGCTGC GCGAATATTT CGAGCAGCTC AACCAGCCGC CGTGGAGCCA GTGCTACCGG
CCCAACTTCT TCGTCAACAC GCCGGACATC AACCCGTTCT TCCTGCACAC CTCCGGCCGC
GCAGGTTTTC TTATCCGTGC CGCGCTGGCG ACCATGGGCT CAGGCTTGTG GGGCATGTAT
TCGGGCTTCG AGCTGTGTGA GGGCACGCCG TTGCCGGGCA AGGAGGAGTA CCTGGATTCG
GAGAAGTACG AAATCCGCCC ACGCGACTTC ACCCAGCCCG GCAACATCAT CGCCGAGATC
GCCCAGCTCA ACCGCATCCG CCGGCAGAAC CGCGCCTTGC AAACCCACCT GGGCGTGGCC
TTCTTCAATT GCTGGAACGA CAACATCCTG TACTTCGCCA AGCGTACGCC CGAGCGGGAC
AACTACATCC TGGTGGCCGT CAGCCTGGAC CCGCACAACG CCCAGGAGGC GCACTTCGAG
TTGCCCCTGT GGGAATTGGG GCTGGACGAC AACGCCGAAA CCCAGGGTGA AGACCTGATG
AACGGCCACC GCTGGTCGTG GTACGGCAAG ACCCAATGGA TGCGCATAGA GCCCTGGCAC
CTGCCGTTCG GCATCTGGCG CATCGCGAAA GCCGGGTAA
|
|---|
| Protein sequence | MSRNEPFESV PMANDHPDQA ISLAQALLAP RIVIEDTQPV LDAGSFAAKA VSGQPVTVST
KAYSDGHDRL AVMLNWRQAH SRRWHCVSMQ AAGNDLWLAE FTPTELGPHR FSIEAWIDPF
ATYCHDLEKK YHAGVEVKLE LEEGRLMLGK GIELCSGALR EELEAVQHRL ATLSTDDQVA
VFLDPTTARL MGEAEHRSYL TRSPEFPLDV DRPAALFASW YELFPRSMTD DPQRHGTFND
VHERLPMIRD MGFDVLYFPP IHPIGMQHRK GRNNALKAEP GDPGSPYAIG SPEGGHEAIH
PQLGSRDDFR RLVAAAAEHG LEIALDFAIQ CSQDHPWLKE HPGWFSWRPD GTIRYAENPP
KKYQDIVNVD FYAPEAVPSL WLALRDVVVG WVEEGVKTFR VDNPHTKPLP FWQWLIANVR
SQHPDVIFLA EAFTKPAMMA RLGKVGYAQS YTYFTWRNHK QELREYFEQL NQPPWSQCYR
PNFFVNTPDI NPFFLHTSGR AGFLIRAALA TMGSGLWGMY SGFELCEGTP LPGKEEYLDS
EKYEIRPRDF TQPGNIIAEI AQLNRIRRQN RALQTHLGVA FFNCWNDNIL YFAKRTPERD
NYILVAVSLD PHNAQEAHFE LPLWELGLDD NAETQGEDLM NGHRWSWYGK TQWMRIEPWH
LPFGIWRIAK AG
|
|---|
| |