Gene Pput_1772 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_1772 
Symbol 
ID5192161 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp2025099 
End bp2025752 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content62% 
IMG OID640586242 
Productputative prophage repressor 
Protein accessionYP_001267111 
Protein GI148547009 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000601077 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000377038 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGAAAACT GGAACGCATT TCTCAAGCGC TACAAGCGCG AACATAACCT CAGTCAGCTC 
CAACTGGCCG AGCGCCTGGG CATGACGCAG GGGGGCGTGG GGCATTGGCT GCGTGGCACG
CGTCGGCCGA CGCTGGAAAC CATCAATGAA AAGCTGGAGA AGCTTGGGCT GGTGTTTCTG
GAAGCCCAGG TCATGGTGGT CGAGCGCGAC ATCGTGCGTG AAGCGCAAGG GCTCTATACG
GCCGAGCAGC CGGTTTCAGC CGAGGCGCTG CTCTATGCCA GCTTCCGCTT CCCGGTGCTG
AGTTGGGCTG ACCTGCAGGG GCCATTGCCT GAAACGAGCA CGTCCCATGA GCAGACGGAC
TATATGCCCG CCGGCAATGC GTTCTGGCTG GTGGTGGAAA ACGACTCGAT GAACGCGGCC
AGTGGTAAGA GCGTGCCCGA GGGTATGCGC GTGCTGGTGG ATACCGGGCT GGAGGCACAG
CCCGGCAGGT TGGTCATTGC ACGGCAGCCG GGGCGCCCGG CGGTATTGCG GCAGTTGGTC
GAAGAGGGTG GAGACAAGAT GCTCAGGCCA CTGAATACGC GCTATCCGAC GGTTTTGTGT
GAAGAAGGCT GCGCGTTTCT GGGAGTGGTG GTGCGGGTAC ATGGGGCCTT CTAG
 
Protein sequence
MENWNAFLKR YKREHNLSQL QLAERLGMTQ GGVGHWLRGT RRPTLETINE KLEKLGLVFL 
EAQVMVVERD IVREAQGLYT AEQPVSAEAL LYASFRFPVL SWADLQGPLP ETSTSHEQTD
YMPAGNAFWL VVENDSMNAA SGKSVPEGMR VLVDTGLEAQ PGRLVIARQP GRPAVLRQLV
EEGGDKMLRP LNTRYPTVLC EEGCAFLGVV VRVHGAF