| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1743 |
|---|
| Symbol | |
|---|
| ID | 5193821 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 1995119 |
|---|
| End bp | 1995616 |
|---|
| Gene Length | 498 bp |
|---|
| Protein Length | 165 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640586213 |
|---|
| Product | NADH dehydrogenase subunit E |
|---|
| Protein accession | YP_001267083 |
|---|
| Protein GI | 148546981 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1905] NADH:ubiquinone oxidoreductase 24 kD subunit |
|---|
| TIGRFAM ID | [TIGR01958] NADH-quinone oxidoreductase, E subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.048618 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.210443 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGCA CGCTTATCCA GACAGACCGT TTCGCCCTGA GCGAAACCGA GCGCTCGGCC
ATCGAGCACG AAATGCATCA CTACGAGGAC CCGCGCGCGG CGTCCATCGA AGCCCTGAAG
ATCGTCCAGA AGGAGCGTGG CTGGGTGCCG GACGGCGCCA TTCACGCCAT CGGCGAAGTG
CTGGGCATTC CGGCCAGCGA CGTCGAGGGT GTCGCCACCT TCTACAGCCA GATCTTCCGC
CAACCGGTCG GCCGCCACAT CATCCGCGTG TGCGACAGCA TGGTCTGCTA CATCGGCGGC
CATGAGTCGG TCGTCAACCA GATCCAGAGC GAGCTGGGCA TCGGCCTCGG CCAGACCACC
GCCGACGGCC GTTTCACCCT GCTGCCCGTG TGCTGCCTGG GCAACTGCGA CAAGGCCCCG
GCACTGATGA TCGACGACGA CACCTTCGGT GACGTGCAGC CGGCTGGCGT TTCCAAACTG
CTGGAGGGTT ACGTATGA
|
|---|
| Protein sequence | MNSTLIQTDR FALSETERSA IEHEMHHYED PRAASIEALK IVQKERGWVP DGAIHAIGEV
LGIPASDVEG VATFYSQIFR QPVGRHIIRV CDSMVCYIGG HESVVNQIQS ELGIGLGQTT
ADGRFTLLPV CCLGNCDKAP ALMIDDDTFG DVQPAGVSKL LEGYV
|
|---|
| |