| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1734 |
|---|
| Symbol | |
|---|
| ID | 5192422 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 1983627 |
|---|
| End bp | 1985096 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640586204 |
|---|
| Product | NADH dehydrogenase subunit N |
|---|
| Protein accession | YP_001267074 |
|---|
| Protein GI | 148546972 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1007] NADH:ubiquinone oxidoreductase subunit 2 (chain N) |
|---|
| TIGRFAM ID | [TIGR01770] proton-translocating NADH-quinone oxidoreductase, chain N |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0116065 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.979482 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTCA CCACTCAACA CTTCATCGCA TTGGCGCCGA TGCTGATCAC CACCATCACC
ACGGTGGTGG TGATGCTGGC GATCGCCTGG AAGCGCAACC ACTCGCAAAC CTTCCTGCTG
TCCACCGTGG GCCTGAACCT GGCCCTGCTG TCGCTCCTGC CGGCACTGAA GGTCGCGCCG
CTGGCGGTCA CCTCGCTGAT CACCATCGAC AAATTCGCCT GCCTGTACAT GGCGATCATC
CTCGTGGCGA CACTGGCCTG CGTCACCCTC GCCCACGCCT ACCTCGGCGA GGGCTCCAAG
GGTTTCCCGG GCAACCGTGA AGAACTGTAC CTGTTGCTGC TGATGTCGGC CCTCGGTGGC
CTGGTGCTGG TCAGCGCCAA CCACCTGGCC GGCCTGTTCA TCGGCCTGGA GCTGCTGTCG
GTACCCGTCT ACGGCCTGGT GGCGTATGCC TTCTTCAACA AGCGATCGCT GGAAGCCGGC
ATCAAGTACA TGGTGCTGTC GGCCGCAGGC TCGGCTTTCC TGCTGTTCGG CATGGCCCTG
CTGTACGCCG ACGCCGGCAG CCTGAGCTTC GACCAGATCG GCAAAGCCCT GGCTACCACC
AGCATGCCAA GCCTGGTGGC CCAGCTGGGC CTGGGCATGA TGCTGGTCGG CCTGGCCTTC
AAGCTGTCGC TGGTACCGTT CCATCTGTGG ACCCCGGACG TGTACGAAGG CGCTCCGGCG
CCGGTCGCCG CGTTCCTGGC AACCGCCAGC AAGGTGGCAG TATTCGCCGT TGTCGTGCGC
CTGTTCATGC TCTCCCCTGC TGCCAGCAGC GGCGTGCTCA GCACCGTACT GGCGGTGATT
GCCGTAGCCT CGATCCTGAT TGGTAACCTG CTGGCACTGA CCCAGAGCAA CCTCAAGCGT
CTGCTGGGTT ACTCGTCCAT CGCCCACTTC GGTTACCTGG TCATCGCGTT GGTCGCCAGC
AAGGGCCTGG CCCTGGAAGC CATGGGCGTT TACCTGGTCA CCTACGTGAT CACCAGCCTG
GGCGCCTTCG GCGTCATCAC CCTGATGTCC TCGCCATACG GCGGCCGTGA CGCCGATGCC
CTGTACGAGT ACCGCGGCCT GTTCTGGCGC CGCCCGTACC TGACAGCGGT ACTGACCGTG
ATGATGCTGT CGCTGGCGGG TATCCCGCTG ACCGCCGGCT TCATCGGCAA GTTCTACATC
ATCGCTACCG GCGTCGAATC GCACCTATGG TGGTTGGTCG GTGCGCTGGT GATCGGTAGC
GCCATCGGCG TGTACTATTA CCTGCGCGTC ATGGTTACCC TGTACCTGGT CGAGCCGAAT
CTGCGTCGTC ACGACGCCCC GCTGAAGTGG GAACAGCGCA CCGGCGGTGT CATGCTGCTG
GCTATCGCCA TTCTCGCTTT CGTACTGGGT GTGTACCCGC AGCCCCTGCT GGAAATGGTT
CAGCAAGCGG GCCTGCAACT GATCGGTTGA
|
|---|
| Protein sequence | MEFTTQHFIA LAPMLITTIT TVVVMLAIAW KRNHSQTFLL STVGLNLALL SLLPALKVAP
LAVTSLITID KFACLYMAII LVATLACVTL AHAYLGEGSK GFPGNREELY LLLLMSALGG
LVLVSANHLA GLFIGLELLS VPVYGLVAYA FFNKRSLEAG IKYMVLSAAG SAFLLFGMAL
LYADAGSLSF DQIGKALATT SMPSLVAQLG LGMMLVGLAF KLSLVPFHLW TPDVYEGAPA
PVAAFLATAS KVAVFAVVVR LFMLSPAASS GVLSTVLAVI AVASILIGNL LALTQSNLKR
LLGYSSIAHF GYLVIALVAS KGLALEAMGV YLVTYVITSL GAFGVITLMS SPYGGRDADA
LYEYRGLFWR RPYLTAVLTV MMLSLAGIPL TAGFIGKFYI IATGVESHLW WLVGALVIGS
AIGVYYYLRV MVTLYLVEPN LRRHDAPLKW EQRTGGVMLL AIAILAFVLG VYPQPLLEMV
QQAGLQLIG
|
|---|
| |