| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1718 |
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| Symbol | |
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| ID | 5192882 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 1967603 |
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| End bp | 1969438 |
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| Gene Length | 1836 bp |
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| Protein Length | 611 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640586188 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001267058 |
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| Protein GI | 148546956 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.359306 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCCAA CGCACCGTCT GCGCCGGCTG GCAGGCAGCC TGTTGCTCGC CTGCCTGAGC
CTTCCCGCGC TGGCCGCACC GCAGCACGCG CTCACCCTTT ACGACGAGCC ACCCAAGTAC
CCCGCCGACT TCAAGCACTT CGACTACGTC AACCCGGATG CGCCCAAGGG CGGCACCTTC
CGCCAGTCCA GCTTCGGCGG CTTCGACAGC CTCAACCCGT TCATCAACAA AGGCGTGGCG
GCCGAGAACA TCGGCATTAT CTATGACACC CTGATGCGCC AGAGCCAGGA TGAACCGTTC
ACCGAATACG GCCTGGTGGC CGGCAAGATC GAAAAGGCCC CGGACAACAG CTGGGTACGC
TTCTACCTGC GCCCCGAAGC GCGCTTCCAT GACGGCCATC CGATGCGCGC CGACGACGTG
GTGTTCACGT TCAACGCCCT GATCAAGGAC GGCGCCCCGC TGTACCGCCA GTACTACGCC
GACGTCGCCG AAGTGGTCGC CGAAGATCCA CTCAAGGTGC TGTTCAAGTT CAAGCACAAG
AACAACCGCG AGCTGCCATT GATTCTCGGC CAGCTGCCGG TACTGCCCAA GCACTGGTAC
GAAAACCGCG AGTTCAACCG CGGCAACCTG GAAATCCCGT TGGGCAGCGG CCCGTACAAG
GTCGCCGAGG TCAAGGCCGG GCGCTCGGTG CGCTACGAAC GGGTCAAGGA TTACTGGGCC
AAGGACCTGC CCATCAACCG TGGCTTCTAC AACTTCGATG TCATGACCTT CGACGCCTAC
CGCGACACCA CCGTCGCCCT GGAGGCCCTC AAGGCCGGGG CATTCGACTA TGGCCTGGAA
GTCAGTGCAA AGAACTGGGC CACCGCCTAC AACGTGCCCG CCGTGCGCGA AGGTCGCCTG
ATCAAGGAAG AGCTGCCCAA CGGCAACCCC ACCGGTATGC AGGGCTTCAT TTTCAACATC
CGCCGCCCGG TGTTCCAGGA TGTGCGTGTG CGCCAGGCCC TGAGCCTGCT GCTGGACTAC
GAGTGGACCA ACAAGCAGCT GTTCAACGGC GCCTACACCC GTACCGGCAG CTACTTCGAG
AACTCGGAAA TGGCCGCCCG CGGCCTACCC AGCCCCAACG AGCTGAAAAT CCTCGAACCA
CTGCGCGGCA AAGTGCCCGA GCAAGTATTT ACCGAGGTCT TCCACAACCC GGTCAGTGAC
GGCAGCGGCA TGATCCGCGA GCAACAGCGC CAGGCCTACA AGCTGTTGCA GGAAGCCGGC
TGGAAAATCG TCGACGACAA GATGGTCGAC GCCCAAGGCA AGCCGGCAAG CATCGAGTTC
CTGCTGGCGC AGACCGAGTT CGAACGCATT CTGCTGCCGT TCAAGCGCAA CCTTGCCGAC
CTCGGTATCG AGCTGAACAT TCGCCGCGTC GACGTTTCGC AATACATCAC CCGCCTGCGC
TCGCGTGACT ACGACATGAT CGTTGGCGGC TACCCGCAAT CCAACTCGCC AGGCAACGAG
CAGCGCGAGT TCTGGTCCAG CGCCGCCGCC GACAACCCCG GCAGCCGCAA CTTCATCGGC
CTGCGCGACC CGGCCATCGA CCAACTGGTG GACCAGCTGA TCAACGCCGA CTCGCGCCAG
AGCCTGGTCG ACCACTGCCG CGCCCTCGAC CGCGTGTTGC TGTGGGGCTA CTACGTGATC
CCCAACTGGC ACATCAAGAC CTGGCGTGTG GCCTACTGGA ACCACATCGG CCACCCGAAC
GTGTCGCCCA AGTACGACAT CGGCATCGAC ACCTGGTGGA TCAAGCCCGA TGTAACCCCG
GCGGTCAGCG AAGCGCCTGC GGACGAGGCC AATTAA
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| Protein sequence | MTPTHRLRRL AGSLLLACLS LPALAAPQHA LTLYDEPPKY PADFKHFDYV NPDAPKGGTF
RQSSFGGFDS LNPFINKGVA AENIGIIYDT LMRQSQDEPF TEYGLVAGKI EKAPDNSWVR
FYLRPEARFH DGHPMRADDV VFTFNALIKD GAPLYRQYYA DVAEVVAEDP LKVLFKFKHK
NNRELPLILG QLPVLPKHWY ENREFNRGNL EIPLGSGPYK VAEVKAGRSV RYERVKDYWA
KDLPINRGFY NFDVMTFDAY RDTTVALEAL KAGAFDYGLE VSAKNWATAY NVPAVREGRL
IKEELPNGNP TGMQGFIFNI RRPVFQDVRV RQALSLLLDY EWTNKQLFNG AYTRTGSYFE
NSEMAARGLP SPNELKILEP LRGKVPEQVF TEVFHNPVSD GSGMIREQQR QAYKLLQEAG
WKIVDDKMVD AQGKPASIEF LLAQTEFERI LLPFKRNLAD LGIELNIRRV DVSQYITRLR
SRDYDMIVGG YPQSNSPGNE QREFWSSAAA DNPGSRNFIG LRDPAIDQLV DQLINADSRQ
SLVDHCRALD RVLLWGYYVI PNWHIKTWRV AYWNHIGHPN VSPKYDIGID TWWIKPDVTP
AVSEAPADEA N
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