| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1685 |
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| Symbol | |
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| ID | 5194103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 1928021 |
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| End bp | 1929184 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640586155 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001267025 |
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| Protein GI | 148546923 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.261181 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGTC CCCCCTTGGC CCGCCGGGCC CTGATCACCT TAGTTAGCCT GGCGACATTG
CTGGCCGTAA GTGCCTGGCA GATCATGCCA CCCCGCCATG ATGGCCTGAA TACCGTCACT
GTCAGCCGGG GTGATATCGA GAGCAGCGTT ACCGCCATCG GCACCTTGCA GCCACGCCGT
TATGTTGACG TCGGCGCCCA GGCATCCGGG CAGATCCGTG CCATCAGGGT CGAGGTCGGC
GACGCGGTGC AAGAAGGCCA GTTGCTGGTC GAGATCGACC CTTCCACGCA ACAGGCCAAG
CTGGACGCGG GACGCTACTC GGTCGAGAAC CTGCAGGCAC AGTTGCAAGA GCAACGTGCC
CAGCATGAGC TGGCCCGGCA GAAGGCCGAG CGCCAGCAGA GCCTGGCGGC AGGCGGCGCC
ACGCGCGAAG AGGATGTGCA AACGGCGCGC GCCGAGCTCA AGGCCACCCA GGCGCGCATC
GACATGATCC AGGCGCAGAT TCGCCAGGCC CAGGCCAGCC TGCGCAGCGA CCAGGCCGAA
CTGGGTTACA CCCGCATCTA TGCCCCCATG AGTGGCACCG TGGTCGCACT GGATGCCCGC
GAGGGGCAGA CGCTTAACGC CCAGCAGCAG ACCCCGCTGA TCCTGCGCAT CGCCAAATTG
TCACCGATGA CAGTCTGGGC GGAAGTGTCG GAAGCGGACA TTGGCCACGT CAAACCCGGC
ATGCACGCCT ATTTCACCAC CCTCAGCGGT GGCACCCGGC GCTGGAACAG CACTGTACGG
CAGATCCTGC CGGTGCCGCC CAAGCCGCTG GAGCATGCCA ACCAGGGCAG CGGCAGCCCG
GCCAGCAAAA GCAATGGCCG GGTGGTGTTG TATACGGTGT TGCTGGACGT CGATAACGCC
GACGGCGCCC TGATGGCAGA AATGACCACC CAGGTGTTCT TCGTCGCTGA CCGTGCGCAC
GATGTGCTGA CCGCCCCGAT TTCCGCGCTC AACCCGGGCA AGCAGCCCGA TCGCAGGCTG
GCACAAGTAC TGACGAAACA CGGCGCCATT GAAAATCGCG AAGTGCGCAC CGGCATCAGC
GACCGCCTGC GCGTGCAGAT TCTCGAAGGG CTGGAAGAAG GTGATCGCCT GCTGATCAGC
CCCTTGCTCA GCGCAGGAGG GTAA
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| Protein sequence | MKRPPLARRA LITLVSLATL LAVSAWQIMP PRHDGLNTVT VSRGDIESSV TAIGTLQPRR
YVDVGAQASG QIRAIRVEVG DAVQEGQLLV EIDPSTQQAK LDAGRYSVEN LQAQLQEQRA
QHELARQKAE RQQSLAAGGA TREEDVQTAR AELKATQARI DMIQAQIRQA QASLRSDQAE
LGYTRIYAPM SGTVVALDAR EGQTLNAQQQ TPLILRIAKL SPMTVWAEVS EADIGHVKPG
MHAYFTTLSG GTRRWNSTVR QILPVPPKPL EHANQGSGSP ASKSNGRVVL YTVLLDVDNA
DGALMAEMTT QVFFVADRAH DVLTAPISAL NPGKQPDRRL AQVLTKHGAI ENREVRTGIS
DRLRVQILEG LEEGDRLLIS PLLSAGG
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