| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1678 |
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| Symbol | |
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| ID | 5193763 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 1913956 |
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| End bp | 1916448 |
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| Gene Length | 2493 bp |
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| Protein Length | 830 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640586148 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_001267018 |
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| Protein GI | 148546916 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.463262 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGCAG GATTTTTCGA GTTCAAACCA TTGGTCAAGG CGCTTTGCAT GTCCCGCTCG
ATCAGCGCCC GCTCATCACG GGCGTTGCTC GGCAAAGGGG TGCTGGGCGC CGCATTGATG
CTGCCCATGG CCGCCCAGGT CTGGGCTCAG GGGGTCAACT TCGACATCGC TGCCCAGTCG
CTGCCCAACG CCCTGCGTGC GCTTGGCGAG CAGGCCGATG TGCAGTTCAT CTACAACGCC
TCGGAAATGG CCGACCTGCG TGGCAATGAA GTGCGTGGCA GCTACACCGT CGATGCGGCA
GTGGCCAAGC TGTTGCGCGG CTTGCCGGTC AGCTACAGCC TGGAGGGCGA TACCCTGACC
CTGGTGCGGC GTGAGCGGCC AGCGTCCTCG GCGCTGGAGC TGGGCACCAC CAGCATCACG
GGCAACACGT TGGGCGTGAC CACCGAAGGC AGCAACTCGT ATACCACCGG TGGCGTCACC
ATCGGCAAGA GCGAACACAA GCTCAAGGAC ATTCCGCAGA GCGTGTCGGT GATGACCCGC
AAGCGCATGG ATGACCAGAA CATCACCGAC TTGCCGACGC TGTTGGCCAA CGCGCCGGGC
ATGACCTTCG CCAAAAGCCC GGGTACCGGC GGCTTCATCA CCTCGCGCGG TTTTGAAATC
GATTCGCTGC AGTACGATGG CGTGCCCATG ACCCGTGGCA TCTACGCGCT GGGCAGCTAC
CTGACGGAAC CGACGGCATT CTATGACCGT GTCGAACTGC TGCGTGGCGG CGCTGCGCTG
CTGCAGGGGG CCAACAGCCC CGGTGGCGCG ATCAACTTCG TGCGCAAGCG CGGCCAGGCC
AAGCCGACAG TCACCCTGAC CGCCCAGGCC GGTTCCTGGG ACCACTATGC CACCCAGGTT
GACGTTGGCG GCCCGCTGAA CGAGGCGGGC AACATCCGTG GGCGTGCCGT GGTCGACTAC
GATACGCGCA ACTCGTTCAT CGACTATGTG GGCGGCTGGG AGCAGAAGGT CTACGGTGCG
CTGGACTTCG ACCTGTCTGA AGACACCACC CTCGGTGTCG GCATCAGCGA TCGCAAGACG
CGTTTCACGC CCATGGTCGC CGGTTTGCCG CGCTTCAGTG ATGGCCGGGA CGTAGGCTTG
TCGCGCTCGA CCTTCACCGG CTCCGACTGG AACCGCGGCA TGACCGAGCA GCTGGCGTTG
TATGTCGACC TCGAGCACCG CTTCAACGAC CACTGGAAGT TCAAGACCGC GGCGGTGGCG
ATCAACGAGC GCAACGAAAT GACCTACGCC TACGTGGTAG CGCCGACCGG CCTGGCCAAC
GATGGGTCTG GGTTGTTCGA CTGGCGCTAT GCCACCGATT TCAACTCCCA CAGCCGCGGC
CTGGACATGT TCGTCGATGG CGACTTCAAC GGTTTTGGCT TCGACCAGGA AGTGGTCTTC
GGCGGTAACT ACTCACGCTT CACCAGCGAC AACACCATGG CGGTGGTGCG CAGCGCGGGG
GCGAACATTT TCGATCTCGA CAACCACTTG CCCTTCGAGA ACTACGACAG CCTGGCGGCC
CGTGGCACGC GTACCGACAG CCAGTACAAG ATCGTGCAGA AAGGTATCTA CGGTACCTGG
CGCGTCAAGC TGACCGACCC GCTGACCTTG ATCCTGGGCG GGCGTACCAG CTGGTACTCC
TATGATTACG ATTCCCAGGT CTATCAGGCC GGCGTCCATC AATACGACAG CCCGGCCTCC
AAGGCCAACA ACGGTGTTGT CACCCCCTAC GCGGGCCTGG TTTACGAATT GACGCCGCAA
TGGTCGGCCT ACGCCAGCTA TGCCGACGTC TTCATCCCGC AGAGTGCCAT TGGCGTGGGT
GGTTCCACGA TCGAGCCGAT CACAGGTAGC AACTACGAGC TGGGCTTGAA GGGCGAGCTC
AACGACGGCC AGGTCAATAC CAGCGTCGCG CTGTTCCGCT ATGACCATGA AAACCGCGCG
GTGCCGATTC TGAACACCGA ATCGTTGTGT GGCGGCTCCA ACTGCGCGGC AGCGTCTGGC
AAAGTGCGTA GCCAAGGCCT TGAAGCCGAG ATCAACGGTG AGGTGCTGCC AGGCCTGCAA
GCGTCGGCCA GTTACGTCTA CAACACCACC AAGTACCTCA AGGACAACAC GAACGAGGGC
AAGATCTTCT CCACCTGGAC GCCGAAACAC TCGGTGAAGG TGTGGACGGA CTACACCCTG
CCTGGTGACT TCAGCCGCTT CAGTGTCGGC GGCGGTTTCA ACAGCCAGAG CAGCACCGTT
GCCTACGACC GCAAATTCGA TTCGCCCGGC TTCACCATCT GGAATGCGCG CCTTGGTTAC
AAGGTCAGCG ATGAAGTCAG CCTGGCGGTC AACTTCAACA ACATCTTCGA CAAGGTGTAC
TACATCCCGT CGTATGCTGC GGTCAGTGCC AACAACTACT ACGGCGACCC TCGCAACTTC
ATGTTCTCGG TCAAATACAC CCCACAGTTC TGA
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| Protein sequence | MPAGFFEFKP LVKALCMSRS ISARSSRALL GKGVLGAALM LPMAAQVWAQ GVNFDIAAQS
LPNALRALGE QADVQFIYNA SEMADLRGNE VRGSYTVDAA VAKLLRGLPV SYSLEGDTLT
LVRRERPASS ALELGTTSIT GNTLGVTTEG SNSYTTGGVT IGKSEHKLKD IPQSVSVMTR
KRMDDQNITD LPTLLANAPG MTFAKSPGTG GFITSRGFEI DSLQYDGVPM TRGIYALGSY
LTEPTAFYDR VELLRGGAAL LQGANSPGGA INFVRKRGQA KPTVTLTAQA GSWDHYATQV
DVGGPLNEAG NIRGRAVVDY DTRNSFIDYV GGWEQKVYGA LDFDLSEDTT LGVGISDRKT
RFTPMVAGLP RFSDGRDVGL SRSTFTGSDW NRGMTEQLAL YVDLEHRFND HWKFKTAAVA
INERNEMTYA YVVAPTGLAN DGSGLFDWRY ATDFNSHSRG LDMFVDGDFN GFGFDQEVVF
GGNYSRFTSD NTMAVVRSAG ANIFDLDNHL PFENYDSLAA RGTRTDSQYK IVQKGIYGTW
RVKLTDPLTL ILGGRTSWYS YDYDSQVYQA GVHQYDSPAS KANNGVVTPY AGLVYELTPQ
WSAYASYADV FIPQSAIGVG GSTIEPITGS NYELGLKGEL NDGQVNTSVA LFRYDHENRA
VPILNTESLC GGSNCAAASG KVRSQGLEAE INGEVLPGLQ ASASYVYNTT KYLKDNTNEG
KIFSTWTPKH SVKVWTDYTL PGDFSRFSVG GGFNSQSSTV AYDRKFDSPG FTIWNARLGY
KVSDEVSLAV NFNNIFDKVY YIPSYAAVSA NNYYGDPRNF MFSVKYTPQF
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