| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1653 |
|---|
| Symbol | |
|---|
| ID | 5193510 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 1858146 |
|---|
| End bp | 1858967 |
|---|
| Gene Length | 822 bp |
|---|
| Protein Length | 273 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640586123 |
|---|
| Product | amino acid ABC transporter periplasmic protein |
|---|
| Protein accession | YP_001266993 |
|---|
| Protein GI | 148546891 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTTGC GCGGAACGGG CAGGGTGCTG GCATGTGTGG CGCTGTTGGT GTCACCACTG
GCCATGGCCG CAGGCAAGTG CGAGCGCCTG GTGGCGACCG GCAGCCCTGA TGCGCCGCCC
TATTCGTGGC AGGACCCGAA AGACCCGAAG CACCTGATCG GCGCCAACGT TGACCTGTTG
CGCCAGGTGG CGGAAGAGCT GGGTGTGAAG GTCGAGGTGC TGAGTGCCGG TCGCCGTGAT
CAGGCGCTGG AAGAGGTGCG CAGCGGGCGC ATGGACCTGC TGCTCGACAC CCCCATGCAG
GTGGAGCAAC TGACCGCGCT GGACTACATC CATCCGCCGT TGCAGCTCAA TGAGTACCTG
GTGTGGACCC GCCACGATGC AGCGGTGACC TTTGATGGCC CGGCCGATCT GGCCAGGTAC
CAGGGCAGTT TGTCCGAGCG TGCGCGCCTG ACCCCGGCCT TTACTGCGTT CGCCAAGGCC
CAGCTCAAGC TGGTGCCGGC GCAGAACCTG ACCCAGGCGT TCCAGAAACT GGTACTCGGC
CAGGTGGATT ATGTGCTGGC TGGCCGTTAC TCCGGTATGG CCATGGCCCA GAGCCTGGGT
ATGAGCAATG ACCTGATAGC CCGCGGCTTG CCGGTGGACA GGCCGGGCCT GTACCTGGCG
CTGTCGCACA ACTCGGCGTG CAATGACAGC TGGTTGCGTG GGCAATTGGC AAAAAAACTG
ACAGAATTGC CGATCTCTGG TGCATCCGAA GCTGTGCTGC AACGTAATGT CGAGCGCTGG
AAAGCGCAGT TGCACGTGCC TGCGGACGCC CCCAAACACT AG
|
|---|
| Protein sequence | MTLRGTGRVL ACVALLVSPL AMAAGKCERL VATGSPDAPP YSWQDPKDPK HLIGANVDLL
RQVAEELGVK VEVLSAGRRD QALEEVRSGR MDLLLDTPMQ VEQLTALDYI HPPLQLNEYL
VWTRHDAAVT FDGPADLARY QGSLSERARL TPAFTAFAKA QLKLVPAQNL TQAFQKLVLG
QVDYVLAGRY SGMAMAQSLG MSNDLIARGL PVDRPGLYLA LSHNSACNDS WLRGQLAKKL
TELPISGASE AVLQRNVERW KAQLHVPADA PKH
|
|---|
| |