Gene Pput_1586 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_1586 
Symbol 
ID5194380 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp1771511 
End bp1772209 
Gene Length699 bp 
Protein Length232 aa 
Translation table11 
GC content64% 
IMG OID640586055 
Productaquaporin Z 
Protein accessionYP_001266926 
Protein GI148546824 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0580] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) 
TIGRFAM ID[TIGR00861] MIP family channel proteins 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCATGT CCCTCGGTAA ACGCATGGGT GCCGAACTGA TCGGCACCTT CTGGCTGGTC 
CTTGGTGGCT GTGGCAGTGC GGTACTCGCA GCCAGTTCCC CCGTCGGCAT CGGTGTGCTC
GGTGTCGCCT TCGCCTTCGG CCTCACCGTA CTGACCATGG CCTTTGCCAT CGGCCATATC
TCGGGTTGCC ATCTAAACCC TGCCGTGTCG TTCGGGCTGG TGGTCGGCGG GCGCTTCCCG
GCCAAAGAGC TGCTGCCTTA TGTGATCGCC CAGGTGATCG GTGCCATCCT GGCGGCCGGG
GTGATCTACC TCATCGCCAG CGGCAAGGCC GGGTTCGAGC TGTCTTCGGG GTTGGCTTCA
AACGGCTACG CCGACCATTC GCCCGGTGGC TATACGCTGG GTGCGGGTTT TGTCAGTGAA
GTGGTGATGA CGGCGATGTT CCTGGTGGTC ATCATGGGGG CGACCGACGC CCGCGCACCG
GCAGGTTTTG CACCGATCGC CATCGGCCTG GCCCTAACCC TGATCCACCT GATCTCGATC
CCGGTGACCA ATACCTCGGT CAACCCCGCG CGTAGCACGG GGCCGGCCTT GTTCGTCGGT
GGCTGGGCCC TGCAGCAGCT GTGGCTGTTC TGGGTGGCGC CGCTGATCGG TGCTGCAATC
GGCGGCGCGC TGTATCGGGG CCTGGCGAAA GAACCTTAG
 
Protein sequence
MSMSLGKRMG AELIGTFWLV LGGCGSAVLA ASSPVGIGVL GVAFAFGLTV LTMAFAIGHI 
SGCHLNPAVS FGLVVGGRFP AKELLPYVIA QVIGAILAAG VIYLIASGKA GFELSSGLAS
NGYADHSPGG YTLGAGFVSE VVMTAMFLVV IMGATDARAP AGFAPIAIGL ALTLIHLISI
PVTNTSVNPA RSTGPALFVG GWALQQLWLF WVAPLIGAAI GGALYRGLAK EP