Gene Pput_1552 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_1552 
Symbol 
ID5190720 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp1735946 
End bp1736734 
Gene Length789 bp 
Protein Length262 aa 
Translation table11 
GC content62% 
IMG OID640586022 
ProductPhzF family phenazine biosynthesis protein 
Protein accessionYP_001266893 
Protein GI148546791 
COG category[R] General function prediction only 
COG ID[COG0384] Predicted epimerase, PhzC/PhzF homolog 
TIGRFAM ID[TIGR00654] phenazine biosynthesis protein PhzF family 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.857589 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACTCG AAATCTTCCA GGTCGATGCC TTTTCCACTG AACCGTTCGG TGGCAACCCG 
GCCGCAGTGA TCCCGCTGGA CAGCTGGCTG CCGGACGATG TGCTGCAGCG CATCGCTGAA
GAAAACAACC TGTCAGAAAC AGCCTACTTC GTGCGCAAAG GCGAAACGTT CGACCTGCGT
TGGTTCACCC CCACCGTGGA AGTCGACCTG TGCGGCCATG CTACCTTGGC CTCGGCTTAC
GTGCTGTTCG AGCAACTGGG TGAGCAGGCG CAAGTACTGC GCTTCAACAC CCGCAGTGGC
GAGCTGCGCG TGAGCCGCAG CACTGATGGC CTGCTGGCCA TGGACTTCCC GGCCAAACAA
CCCGTAGCGG TGGACACGCC GGCGGGCCTG CTGCAGGCGC TGGGCTTGAG CCAGGCGAAG
GCGGTGTACC GTAGCGACGA TTATGTGGTG GTGATCGATG ACGCCATGCT GCTCGAAACG
TTGAAACCCG ACTTTGTTGC GCTGTCGGCC TTCGACGTCC GTGGCATTGC CGTGACCGCG
GCAGGGCGTG GCTTTGACTT CGTCACCCGC TGGTTCGGCC CGCGGGTTGG TGTGAATGAA
GACCCGGTAA CCGGTTCGGC ACACACCTCA CTGGCGCCGT TATGGGCCCA AAGGCTGGGC
AAGAACGTGC TGAGCTGCGA GCAGGGCGGG GCACGCAAAG GGCAGTTGCA GTGCGAAGTG
CCGGGCAATG GCCGCGTGAT CATCAGTGGG CGGGCGGCGT TGTACCTGCG GGGCAATGTG
TACATCTAG
 
Protein sequence
MQLEIFQVDA FSTEPFGGNP AAVIPLDSWL PDDVLQRIAE ENNLSETAYF VRKGETFDLR 
WFTPTVEVDL CGHATLASAY VLFEQLGEQA QVLRFNTRSG ELRVSRSTDG LLAMDFPAKQ
PVAVDTPAGL LQALGLSQAK AVYRSDDYVV VIDDAMLLET LKPDFVALSA FDVRGIAVTA
AGRGFDFVTR WFGPRVGVNE DPVTGSAHTS LAPLWAQRLG KNVLSCEQGG ARKGQLQCEV
PGNGRVIISG RAALYLRGNV YI