| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1540 |
|---|
| Symbol | |
|---|
| ID | 5193858 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 1726780 |
|---|
| End bp | 1727412 |
|---|
| Gene Length | 633 bp |
|---|
| Protein Length | 210 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640586010 |
|---|
| Product | cytochrome c biogenesis protein CcmA |
|---|
| Protein accession | YP_001266881 |
|---|
| Protein GI | 148546779 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG4133] ABC-type transport system involved in cytochrome c biogenesis, ATPase component |
|---|
| TIGRFAM ID | [TIGR01189] heme ABC exporter, ATP-binding protein CcmA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCCTTC ACCTCCAAGC CGCAGGCCTG GCCTGCGAGC GCGACTGGCG CCTGCTGTTC
GAACAGCTCG ATTTCGAGCT GGGCGCCGGT GACATGCTGC AGATCAGTGG CCCCAACGGC
AGTGGCAAGA CCAGCCTGTT GCGCCTGTTG GCCGGGCTGA TGCAGCCGAC GGCCGGGCAG
ATTCTGCTGG GTGGCAAGCC ACTGGCAGAA CAGCGTCATG CCCTGGCCAG CGCCCTGCTG
TGGATTGGCC ACGCCGCCGG CATCAAGGAC TTGCTCACCG CCGAGGAAAA TCTCACCTGG
CTGTGCGCCT TGCACCAGCC GGCCAGCCGC GAGGCGATCT GGGCGGCGCT GGAGGCTGTC
GGCCTGCGCG GTTTCGAAGA CGTCCCCTGC CATACCCTGT CGGCCGGCCA GCAGCGCCGC
GTGGCGCTGG CCCGGCTGCA CCTGGCTTGC CCGCCGCTAT GGATTCTTGA CGAGCCGTTC
ACCGCGCTGG ACAAGCAAGG CGTGGCGCAG CTTGAAGCGC ACCTGGCAGC CCACTGCGAG
CAGGGCGGCA CGGTGGTGCT GACGACTCAC CACACACTGG AACGCAAGCC CTCCGGTTAC
CGAGAACTGA ACCTGGGGCA ATGGGCTGCA TGA
|
|---|
| Protein sequence | MTLHLQAAGL ACERDWRLLF EQLDFELGAG DMLQISGPNG SGKTSLLRLL AGLMQPTAGQ
ILLGGKPLAE QRHALASALL WIGHAAGIKD LLTAEENLTW LCALHQPASR EAIWAALEAV
GLRGFEDVPC HTLSAGQQRR VALARLHLAC PPLWILDEPF TALDKQGVAQ LEAHLAAHCE
QGGTVVLTTH HTLERKPSGY RELNLGQWAA
|
|---|
| |