| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1431 |
|---|
| Symbol | |
|---|
| ID | 5193020 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 1605178 |
|---|
| End bp | 1605876 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640585896 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_001266773 |
|---|
| Protein GI | 148546671 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4160] ABC-type arginine/histidine transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.00987001 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.746207 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCTTCG ACTACAACGT CGTCTGGGAA GCGCTGCCGA TGTACTTCGG CGGTTTGCTG
ACCACCCTGA AACTGCTGGC GATTTCGCTT TTCTTCGGCC TGTTGGCAGC CATTCCGCTG
GGCCTGATGC GGGTATCCAG GCAGCCGGTG GTCAACCTTG CTGCATGGCT GTACACCTAC
GTCATCCGTG GCACGCCGAT GCTGGTGCAG CTGTTCCTGA TCTACTACGG CCTGGCCCAG
TTCGAGGCGG TGCGCGAGAG TATCTTCTGG CCGCTGCTGT CCAGCGCCAC CTTCTGCGCC
TGCCTGGCGT TCGGCATCAA TACCAGTGCC TACACGGCCG AAATCATTGC CGGCAGCCTC
AAGGCGACGC CGCATGGCGA GATCGAAGCT GCCAAGGCCA TGGGGATGTC GCGCATGAAA
ATGTACCGCC GCATCCTGCT GCCTTCGGCA CTGCGTCGGG CACTGCCGCA ATACAGCAAT
GAAGTGATCA TGATGCTGCA GACCACCAGC CTGGCGTCGA TCGTCACCCT GATCGACATC
ACCGGTGCTG CGCGCACGGT CAATGCCCAG TACTACCTGC CTTTCGAGGC CTATATCACG
GCGGGCGTGT TCTACCTGTG CCTGACCTTC ATCCTGGTGC GCCTGTTCAA GATGGCCGAA
CGCCGCTGGC TCGGCTACCT GGCGCCGCGC AAGCACTGA
|
|---|
| Protein sequence | MIFDYNVVWE ALPMYFGGLL TTLKLLAISL FFGLLAAIPL GLMRVSRQPV VNLAAWLYTY
VIRGTPMLVQ LFLIYYGLAQ FEAVRESIFW PLLSSATFCA CLAFGINTSA YTAEIIAGSL
KATPHGEIEA AKAMGMSRMK MYRRILLPSA LRRALPQYSN EVIMMLQTTS LASIVTLIDI
TGAARTVNAQ YYLPFEAYIT AGVFYLCLTF ILVRLFKMAE RRWLGYLAPR KH
|
|---|
| |