| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1416 |
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| Symbol | |
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| ID | 5190198 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 1582583 |
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| End bp | 1583650 |
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| Gene Length | 1068 bp |
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| Protein Length | 355 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640585881 |
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| Product | RNA-binding S4 domain-containing protein |
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| Protein accession | YP_001266758 |
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| Protein GI | 148546656 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.504489 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGAGC AAGACCTGAA AGAAACCGAA ATCACCCCGC CATCCGGCGA AAAGCTGCAG
AAAGTGCTGG CGCGCATTGG CGTGGGCTCG CGGCGTGATG TCGAGGCCTG GATCAGCCAG
GGTCGCATCA AGGTCAACGG CGTCGAGGCC ACCCTTGGCC AGCGCGTAGA CCTGCACGAC
GCCATCGCCG TGGACGGCAA GCTGATCAAG CGCGAGGAGG CCGCCGAGGC CACCCGCCGG
GTGATCATGT ACAACAAGCC CGACGGCGAA ATCTGCACCC GTGACGACCC GGAAGGGCGC
CCGACCGTGT TCGACCGTTT GCCACGGCCA AAAGAAGGCC GCTGGATCAA CATCGGCCGC
CTCGACATCA ACACCACTGG CTTGCTGCTG TTCACCACCG ACGGTGAGCT GGCCAACCGC
CTGATGCACC CGTCCTACGA GATGGACCGT GAGTACGCGG TACGTGTGCG TGGTGAAGTC
GACGACGAGA TGATCGAGCG CCTGAAAGCC GGCGTAATGC TGGAAGACGG CCCGGCCAAG
TTCACCGATA TCCAGAAGGC ACCGGGTGGC GAAGGCTTCA ACCACTGGTA CCACTGCGTG
GTGATGGAAG GTCGTAACCG TGAGGTGCGT CGCCTGTGGG AATCCCAGGG CATGGTGGTC
AGCCGCCTGA AGCGTGTGCG TTTCGGCCCG GTGTTCCTCA ATTCGGACCT GCCGATGGGC
CGCTGGCGCG AAATGACCCA GGGCGAAATC GACATCCTCG CCGCCGAAGT GGGCTTGCAG
CCGGTCGCGC TGCCAGCCAT GAAGCTCAAG GCCAAGGACA AGATGGAGCG CCTGCAGCGC
AAGTCGACCC GCCCGCTGGG CCGTGGCGAG CGCGTGCGCA ACCTGCGCCC GGCCCACGAA
GGTGCCGCTA CTGGCGAACG CCCTGCGCGT CAGCCGCGTG AAGAAGCGCC GCGTAAACCC
ACCCGTGGCA GCACGGTGGC TGAGCGCCCG AGCGAGATGC GCAAGCGTCC GGGCAAACCT
GATGGCGACA AGCCGGCAGG CCGTGGTCGC GGCAAGCCGC GTGGCTGA
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| Protein sequence | MSEQDLKETE ITPPSGEKLQ KVLARIGVGS RRDVEAWISQ GRIKVNGVEA TLGQRVDLHD
AIAVDGKLIK REEAAEATRR VIMYNKPDGE ICTRDDPEGR PTVFDRLPRP KEGRWINIGR
LDINTTGLLL FTTDGELANR LMHPSYEMDR EYAVRVRGEV DDEMIERLKA GVMLEDGPAK
FTDIQKAPGG EGFNHWYHCV VMEGRNREVR RLWESQGMVV SRLKRVRFGP VFLNSDLPMG
RWREMTQGEI DILAAEVGLQ PVALPAMKLK AKDKMERLQR KSTRPLGRGE RVRNLRPAHE
GAATGERPAR QPREEAPRKP TRGSTVAERP SEMRKRPGKP DGDKPAGRGR GKPRG
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