| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1400 |
|---|
| Symbol | |
|---|
| ID | 5193583 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 1569802 |
|---|
| End bp | 1570569 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640585865 |
|---|
| Product | helix-turn-helix domain-containing protein |
|---|
| Protein accession | YP_001266742 |
|---|
| Protein GI | 148546640 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.113749 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.478615 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCG GCCCGATCCT CTCGCTGCGC CATTACCGCG ACAGCCTGAT CGCCCACAGC
CACGAACACC CGCAACTGGT GTTCGGCCTG CGCGGCCGCC TGGAGTTCGA GGTCCAGGGG
CATGGCGCCG GCATCGATCG TCAGGGGCTG ATCGTGGTCC CGGCGGGTGC TCATCACACG
TGCGCCAGCG ATGCCGGCAG TGATTGCCTG GTGCTTGATG TGCCAGGGGA GCCTTGGCTG
CGCGAGCACT TGGGCGAGCA TGCCGATGCC AGCCGCCGCC TGCTCGACCG CCCCGCCGCC
GTGAGCCTGG ATGAGCGCCA GCAGCAACTG GTGGACTGGC TGGCGGCCAG CCCCGTGCAC
GACCCACTGA TTGCCAGGCA AGGCGCGGCA CTGCTGCTGG CCAGCCTCAA CGCCACGGCG
GCAGCCAGCG TGCACGCCAG CCAGCGCCTG CCCTACAGCG CCTTCGATGC GCATATCGAG
CAACATGCGG CTTACCCGCT GCAGGTAGCT GACCTGGCGC GCATCGCCGG GCTGTCCAGT
GCCCGGCTGC ATGCGCGCTT TACCACTGAG TGCGGGATGA CGCCGATGGA CTACATTCGC
CAGCGGCGTT TGCTCAAGGC GCGGCGGCTA ATCGTGCAGA CCGTGCTGCC GATGGGCGAA
ATTGCGGCGC AGGTGGGGTA TAGCTCGCAA AGTGCCTTTT CAGCGGCGAT GCTACGGGCG
TTCGGGTGTA CACCTTTGGC TTTGCGGCGA GAGTCTGGCG ATAACTGA
|
|---|
| Protein sequence | MTAGPILSLR HYRDSLIAHS HEHPQLVFGL RGRLEFEVQG HGAGIDRQGL IVVPAGAHHT
CASDAGSDCL VLDVPGEPWL REHLGEHADA SRRLLDRPAA VSLDERQQQL VDWLAASPVH
DPLIARQGAA LLLASLNATA AASVHASQRL PYSAFDAHIE QHAAYPLQVA DLARIAGLSS
ARLHARFTTE CGMTPMDYIR QRRLLKARRL IVQTVLPMGE IAAQVGYSSQ SAFSAAMLRA
FGCTPLALRR ESGDN
|
|---|
| |