| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1392 |
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| Symbol | |
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| ID | 5195150 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 1560511 |
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| End bp | 1561869 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640585857 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_001266734 |
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| Protein GI | 148546632 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCGTTT TGAACCCCAT CACCAGTGCT TTACTGTTGG CCCTGGCGAG TGCCAACGTA
CAGGCGATGT CGATTACCGA GGCTGTCCAA AGCGCCGTGG ACTACCACCC ACAAGTCAGC
TCCAACCGTA ACAGCAAGCT GTCGGCCGAT GAAGACGTGA AGTTCGCGCG TGGTGGCTAC
TACCCTTCCG TGGACCTGGT TGCCGGTTAC GGCCGCCAGC GCTCGGACAA CGCCACTACC
CGCGCCGAGG GAAACCACAA CAAGGAAACC CTCAACTACA CCCAGTCCGA ACTGCGCCTG
CGGCAGATGA TCTTCGACGG CTTCAACACC TCGAATGAAG TAGGCCGCAC CGAGGCGGTC
TCTACCTCCC GCGCCTATTA CACCCAGGCC GTTGCCCAGG ATGTCGCCCT GCGTGCAGTC
GAGGTCTACC TGGAAGTGCT CAAACGCCGT GAACTGGTGA CCCTGGCCAA GAACAACCTG
CAAGCTCACC TGCGCGTCAA CGACCAGATT GGCCTGCGCA ACGAGCGCGG CGTCGGCAGC
ACCGCCGACC TCGACCAGTC CCGCGCACGT CGCGCCCTGG CGGAAAACAA CCTGGACACC
GCCGAAGTCG ACCTGGCCGA TGCCGAGGCC AACTTCTTCA GCGTGATCGG CCGTGCCCCG
GACGAGCTGG AAAGCCCGCA AAGCATCAAG GGCGAGGTGC CTGGCACCCT CGACGAAGCC
CGCGATGGCA TGCGTCAGAA CAACCCGTAC ATCAAGTCTG CCCAGGCTGA CGTCAACGCC
GCCGAGAAGC AGTACGAAGT GGGCAAGTCG ACCTTCTACC CACGCTTCGA CGCCATTCTG
GCAACCGGTG CCAACAACAA CACCGGCGGC GAGAAAGGCC ACAACAACAA CGACTGGCAA
GCTGGCGTGG AGATGAACTA CAACCTGTTC CGCGGTGGCA GCGACAAGGC TCGCCTGCAG
TCCGACGCGC ACAAGATCAA CCAGGCACTG GACATTCGCA ACAACGCCCT GCGTGAGTTG
ACCGAAAACC TGAGCCTGGC GTGGAACGCC ATGAACAACG CCAGCAAGCA GTTGCCAACC
GCGCGTGAAT ACGCCGAGAC CACCAAACGT GTGCGCGCGG CGTACCAGGA CCAGTTCGGC
CTGGGCCAGC GCACCCTGCT GGACGTCCTC GACAGTGAGA ACGAGCTGTA CAACGCAGAC
CGTCGCTACA CCGAGGTGCG TTATACCGAA GAGTTCTCGC GCTACCGCGT ACTGGCGACC
ATGGGTGAAT TGCTGAGCAA ACAGCATATT TCGTTGCCAC CAGAGGCGCT GGCGACCACC
GAAGTCCGCA CCGAGGCGCG TCTGCCTGAG ATGCGTTGA
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| Protein sequence | MRVLNPITSA LLLALASANV QAMSITEAVQ SAVDYHPQVS SNRNSKLSAD EDVKFARGGY
YPSVDLVAGY GRQRSDNATT RAEGNHNKET LNYTQSELRL RQMIFDGFNT SNEVGRTEAV
STSRAYYTQA VAQDVALRAV EVYLEVLKRR ELVTLAKNNL QAHLRVNDQI GLRNERGVGS
TADLDQSRAR RALAENNLDT AEVDLADAEA NFFSVIGRAP DELESPQSIK GEVPGTLDEA
RDGMRQNNPY IKSAQADVNA AEKQYEVGKS TFYPRFDAIL ATGANNNTGG EKGHNNNDWQ
AGVEMNYNLF RGGSDKARLQ SDAHKINQAL DIRNNALREL TENLSLAWNA MNNASKQLPT
AREYAETTKR VRAAYQDQFG LGQRTLLDVL DSENELYNAD RRYTEVRYTE EFSRYRVLAT
MGELLSKQHI SLPPEALATT EVRTEARLPE MR
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