| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1336 |
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| Symbol | |
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| ID | 5191202 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 1499687 |
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| End bp | 1500925 |
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| Gene Length | 1239 bp |
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| Protein Length | 412 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640585803 |
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| Product | RNA polymerase ECF-subfamily sigma factor |
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| Protein accession | YP_001266680 |
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| Protein GI | 148546578 |
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| COG category | [K] Transcription |
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| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.341377 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGCAC TGGCCCAGGT GCGCGCCGAA GTCGAGGCCG TGTACCGGCG GGAATCGCGG
CGCATACTGG CGACACTGAT CCGCTTGCTG GGTGATTTCG ACCTGGCCGA GGAGGCCATG
CATGACGCCT TCTTCATTGC CGTCGAGCGC TGGCAACGCG ACGGTATCCC CGCCAACCCG
CGAGCGTGGC TGGTCTCTGT CGGGCGCTTC AAGGCCATCG ACGCGCTGCG CCGGCGCGTC
CGCTTCGACC GCTCCCAGGC GGACTTGAGC ATGCTGCTGG ATGGTCAGGC GCAGGACCCC
AGTGAAGAAG AACTGCTGGC GGATGACCGC CTGCGGCTGA TCTTCACTTG TTGCCATCCG
GCCCTGTCGG CCGACGCTCA GGTGCCATTG ACGCTTCGCG AAGTCTGCGA CCTGACCACC
GAGCAGATCG CCCGCGCCTT TCTGCAAAGC CCGGCCACCA TCGCCCAGCG TATCGTGCGC
GCCAAGGCCA AGATCCGTGA CGCGGGCATA CCGTATCAGG TACCGGAGCT GAATGAGCTG
CCCGAGCGCC TGGAAAGCGT ATTGCGGGTG ATCTACCTGG TGTTCAATGA GGGCTATTCG
GCGTCATCGG GCGAAACACT GCTGCAGCAG GAACTGAGCG ATGAAGCCAT TCGCCTGGCG
CGGTTGCTGG TGCAGTTGCT GCCCGACCCG GAGGCGGTCG GCCTGCTGGC GTTGATGTTG
CTGCAGGCGT CCCGGCAGCG GGCGCGCATC GATGGCCAAG GCGATTTGGT GGTTCTGGAG
CAGCAGGACC GTAGCCTGTG GGACCGGCAG TTCATTGCCG AAGGCTGTGC TCTGGTGCGC
CAGGCCCTGC AGAGCCGTGC ATTTGGGGCC TATACCATCC AGGCGGCGAT TGCTGCCGTG
CATGCCGAAG CGGCGACGGC TGAAGAGACG GACTGGGGAG AAATCGTCGG CCTGTATGAC
GTGTTGCAGC GGTATTGGCC ATCAGCGGTG GTGGCGCTTA ACCGCGCGGT GGCCCTGGCG
AAGCGGGATG GGCCGGAGGT TGGCTTGCGG GAAGTCGAAG GGATCCTGGC GCGGGGGGAG
TTGCTGGACT ATCACCTGGC ACATGCGGCG CGCGCCGAGT TGCATTGCCA ACTGGGGCAG
GTAGAAGAGG CGCGAGCGGC CTGGCAGCAG GCGCTGGCCT TGACCCGACA GGCGCCTGAG
CGGCGGCATA TCGAGCGGCG TTTGCAGGCT ATCGAATGA
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| Protein sequence | MAALAQVRAE VEAVYRRESR RILATLIRLL GDFDLAEEAM HDAFFIAVER WQRDGIPANP
RAWLVSVGRF KAIDALRRRV RFDRSQADLS MLLDGQAQDP SEEELLADDR LRLIFTCCHP
ALSADAQVPL TLREVCDLTT EQIARAFLQS PATIAQRIVR AKAKIRDAGI PYQVPELNEL
PERLESVLRV IYLVFNEGYS ASSGETLLQQ ELSDEAIRLA RLLVQLLPDP EAVGLLALML
LQASRQRARI DGQGDLVVLE QQDRSLWDRQ FIAEGCALVR QALQSRAFGA YTIQAAIAAV
HAEAATAEET DWGEIVGLYD VLQRYWPSAV VALNRAVALA KRDGPEVGLR EVEGILARGE
LLDYHLAHAA RAELHCQLGQ VEEARAAWQQ ALALTRQAPE RRHIERRLQA IE
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