| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1288 |
|---|
| Symbol | |
|---|
| ID | 5195534 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 1456624 |
|---|
| End bp | 1457511 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640585756 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001266633 |
|---|
| Protein GI | 148546531 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.442115 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACATCA AGCAGCTCAA GTTCCTCATC GCCCTCGACC AGACCCGCCA CTTCGGCCAG
GCGGCGGCGC TGTGCCATAT CACCCAACCG ACGCTGTCCA TGCGCCTGCG CAACCTGGAA
GACGAACTGG ACCTGGTGCT GGTCAAGCGG GGCCAGCGCT TCGAAGGTTT CACCGAGGCC
GGCGAGCGCA TCCTGGCCTG GGCCCGTACC CTGCTCGCCG CCCATGACGG CCTGCAGGCC
GAGGCTGCCA GTTGCCGTGG CCAGGTGGTC GGCAGCCTGC GCCTGGGCAC GGTGCCGCTG
GCCAGTTTCA ACCCCATGCA CCTGCTGCTG CCCCTGCGCG AAAAATACCC CGAACTGCAC
TTTCAGCTCA GCTCGCTGAG TTCGGAACAG GTCATCGACG GCCTCAGCCG CAACCAGCTC
GACCTGGGTA TCTGCTACCT GGACCAGGTC AACACCAGCT TCTTCGAAGT GATCGAACTC
GGCACCACCA CCATGGGCCT GCTGCACGAT ACACGGCACT TCCAGTTCGC CAGCGACCGG
CTGCGCTGGG ACGAGCTTGG CGATATTCCG CTGGGGCTGC TGAGCAAAGG CATGCACTAC
CGCCAGTCGC TGGACCTGAG CTTCCGCAGC CGTGGCCTGG AGCCCAATGC GGTGCTTGAG
AGCGACTCGA GCTTCCAGCT TATCCAGGCC ATCAACACCG GCCTATGCTG CGCGATCATG
CCACTGGACT GCGGCCTGGA AGACCTCAGC GAGCACCTGC GCATCGTACC GGTGGCCGAC
GCCGCCATCC ACAGCCCGGT CGGCCTGCTG CTGCGCCGCA GCGAGCCGCG CTCGGCGATT
GCCGAGCAAT GCTTTGCCGA GGCCCGGGGG TTGTTTCAGG CCACCTGA
|
|---|
| Protein sequence | MDIKQLKFLI ALDQTRHFGQ AAALCHITQP TLSMRLRNLE DELDLVLVKR GQRFEGFTEA
GERILAWART LLAAHDGLQA EAASCRGQVV GSLRLGTVPL ASFNPMHLLL PLREKYPELH
FQLSSLSSEQ VIDGLSRNQL DLGICYLDQV NTSFFEVIEL GTTTMGLLHD TRHFQFASDR
LRWDELGDIP LGLLSKGMHY RQSLDLSFRS RGLEPNAVLE SDSSFQLIQA INTGLCCAIM
PLDCGLEDLS EHLRIVPVAD AAIHSPVGLL LRRSEPRSAI AEQCFAEARG LFQAT
|
|---|
| |