| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1287 |
|---|
| Symbol | |
|---|
| ID | 5194474 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 1455854 |
|---|
| End bp | 1456636 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640585755 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001266632 |
|---|
| Protein GI | 148546530 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.400393 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACA CCCCCCTGGC AACCCTCTAC CAGTCTCTCG ACCAGCACCG CCCCGCCACC
CTCGAGGCCC TGCTCGCCGG CGTATCGCTG TTGCTGCCGA TGCTCGACGC CATCCCCAAC
GCCGCGATCT TCATCAAGGA TTCTGCCGCC CGCTATGCGT TGGCCAACAA CACACTGGTC
CAGCGCTGTG GCCTCAAGCA CCTGCAACCG CTGCTGGGCA AGACCAGCGC CGAGGTGTTT
CCGGCACAGT TTGGCCCCGG CTATACCGAG CAGGATCGAC GTGTTCTCAA GGAAGGCCTG
GTGCTGGAGG ACCAGTTGGA GCTGCACCTC TACGGCAGCC GTGAGCCCGG CTGGTGCCTG
ACCCACAAGC GCCCGCTGTA CAACCCTGCC GGCGAAATCA TCGGCCTGGT CGGCATCTCG
GTCGACTTGC AGTCAGCCGC CGACAGCCAC CCCGCCTATC AACGCCTGGC CGCAGTGGAC
GAGCACATTC GCCAGCATTT TCACCAGCCG ATCAGCATGG GCGAGCTGAC CCGCATCGCC
GGTATTTCCG TGGCCCAGCT GGAGCGCTAT TGCAAGCGGG TGTTCCACCT CACGCCCCGG
CAGATGATCC ACAAGGCGCG CCTGGAGCAT GCCCATCGCC TGCTGCATTC GGAGCTGCCG
ATCACTGAAG TGGCGATGCG CTGCGGCTAC ACCGACCACA GCGCCTTCAG CCGCCAGTTC
AAGCAACTGA CCGGCTTTAC GCCGCGCCAG TATCGCCAGG CTACCGCCGA TCAGGTGGCC
TGA
|
|---|
| Protein sequence | MTDTPLATLY QSLDQHRPAT LEALLAGVSL LLPMLDAIPN AAIFIKDSAA RYALANNTLV
QRCGLKHLQP LLGKTSAEVF PAQFGPGYTE QDRRVLKEGL VLEDQLELHL YGSREPGWCL
THKRPLYNPA GEIIGLVGIS VDLQSAADSH PAYQRLAAVD EHIRQHFHQP ISMGELTRIA
GISVAQLERY CKRVFHLTPR QMIHKARLEH AHRLLHSELP ITEVAMRCGY TDHSAFSRQF
KQLTGFTPRQ YRQATADQVA
|
|---|
| |