| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1252 |
|---|
| Symbol | |
|---|
| ID | 5195526 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 1417348 |
|---|
| End bp | 1417848 |
|---|
| Gene Length | 501 bp |
|---|
| Protein Length | 166 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640585718 |
|---|
| Product | peptidoglycan-associated lipoprotein |
|---|
| Protein accession | YP_001266597 |
|---|
| Protein GI | 148546495 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
|---|
| TIGRFAM ID | [TIGR02802] peptidoglycan-associated lipoprotein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0470873 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAATGC TGAAGTTTGG TAAATTTGCT GCGCTGGCTC TGGCCATGGC CGTAGCTGTA
GGTTGCTCCT CGAAGGGCGG TGATAACGCA GGCGAAGGCG CTGCTGTAGA CCCTAACGCT
GGCTACGGTG CCAACACTGG CGCTGTTGAC GGCTCCCTGA GCGAAGAAGC CGCCCTGCGC
GCAATCACCA CCTTCTACTT CGAATACGAC AGCTCGGACC TGAAGCCAGA AGCCATGCGC
GCTCTGGACG TTCACGCCAA GGACCTGAAA GCCAACGGCA ACCGTGTTGT TCTGGAAGGT
AACACCGACG AGCGCGGCAC CCGCGAGTAC AACATGGCTC TGGGTGAGCG TCGTGCGAAA
GCCGTTCAGC GCTACCTGGT TCTGCAGGGC GTTTCCCCTG CTCAGCTGGA ACTGGTTTCC
TACGGCGAAG AGCGTCCAGT TGCTACCGGC AACGACGAGC AGTCCTGGGC TCAGAACCGT
CGCGTAGAAC TGCGTAAGTA A
|
|---|
| Protein sequence | MEMLKFGKFA ALALAMAVAV GCSSKGGDNA GEGAAVDPNA GYGANTGAVD GSLSEEAALR
AITTFYFEYD SSDLKPEAMR ALDVHAKDLK ANGNRVVLEG NTDERGTREY NMALGERRAK
AVQRYLVLQG VSPAQLELVS YGEERPVATG NDEQSWAQNR RVELRK
|
|---|
| |