| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1203 |
|---|
| Symbol | |
|---|
| ID | 5194813 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 1362063 |
|---|
| End bp | 1363034 |
|---|
| Gene Length | 972 bp |
|---|
| Protein Length | 323 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640585666 |
|---|
| Product | TRAP dicarboxylate transporter, DctP subunit |
|---|
| Protein accession | YP_001266548 |
|---|
| Protein GI | 148546446 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTTCA AACGCAAGCT GCTTCTTGCC GTACTCCCGT TCGCCTTCAG CGTGGCCATG
CCCGCCTCGG CGCTGGACAT CAAGTTCGCC GAAATCCACC CGGCCGGCTA CCCGACCGTG
GTCGCCGAGC AGAACATGGG TAAAAAGCTG GAACAGGCCA GCAATGGCGA CATTACCTTC
AAGATGTTCG CCGGCGGGGT GCTGGGATCG GAGAAGGAAG TGATCGAACA GGCTCAGATC
GGCGCCGTGC AGATGACCCG CGTCAGCTTA GGGATCGTCG GCCCGGTCGT ACCGGATGTG
AACGTGTTCA ACATGCCGTT CGTGTTCCGC GACCATGATC ACATGCGCAA GATTATCGAT
GGCGAGATCG GCCAGGAGAT CCTCGACAAG ATCACCAACT CCGACTTCAA CCTGGTGGCC
TTGGCCTGGA TGGACGGCGG CTCGCGCAGC ATCTACACCA AAAAGCCGGT GCGCAGCCTG
GAAGACCTCA AAGGCATGAA GATTCGCGTA CAGGGCAACC CGCTGTTCAT CGACATGATG
AACGCCATGG GCGGCAACGG CATCGCCATG GACACCGGGG AAATCTTCAG TGCCCTGCAA
ACCGGGGTGA TCGACGGCGC CGAGAACAAC CCGCCGACCT TGCTTGAGCA CAACCATTTC
CAGAGCGCCA AGTACTACAC CCTGACCGGC CACCTGATCC TGCCGGAGCC GGTGGTGATG
TCCAAGACCA CCTGGAACAA GCTCACTCCG GAGCAGCAGG TGCTGGTGAA AAAGGTCGCG
CGCGAAGCAC AGATGGAAGA ACGCGCGCTG TGGGACGCCA AGTCTGCCGC CAGCGAAGAG
AAGCTCAAGG CCGCCGGTGT CGAGTTCATC ACTGTCGACA AGAAGCCGTT CTATGACGCC
ACCGCCTCGG TACGCGAGAA GTACGGCGCG CAGTACGCCG ACCTGATGAA GCGTATCGAC
GCCGTCCAGT AA
|
|---|
| Protein sequence | MTFKRKLLLA VLPFAFSVAM PASALDIKFA EIHPAGYPTV VAEQNMGKKL EQASNGDITF
KMFAGGVLGS EKEVIEQAQI GAVQMTRVSL GIVGPVVPDV NVFNMPFVFR DHDHMRKIID
GEIGQEILDK ITNSDFNLVA LAWMDGGSRS IYTKKPVRSL EDLKGMKIRV QGNPLFIDMM
NAMGGNGIAM DTGEIFSALQ TGVIDGAENN PPTLLEHNHF QSAKYYTLTG HLILPEPVVM
SKTTWNKLTP EQQVLVKKVA REAQMEERAL WDAKSAASEE KLKAAGVEFI TVDKKPFYDA
TASVREKYGA QYADLMKRID AVQ
|
|---|
| |