| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1201 |
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| Symbol | |
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| ID | 5190524 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 1360188 |
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| End bp | 1361468 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640585664 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001266546 |
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| Protein GI | 148546444 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGCGT TCATTCTGTT GGGCAGTTTC ATCGTGCTGA TTCTGATCGG CATGCCGGTA
GCCTACGCCC TCGGCCTGTC GGCACTGATC GGCGCCTGGT GGATCGACAT CCCGCTGCAG
GCGATGATGA TCCAGGTGGC CAGTGGGGTT AACAAGTTCT CGCTGCTGGC GATTCCGTTC
TTCGTGCTGG CGGGCGCGAT CATGGCCGAA GGCGGCATGT CGCGGCGGCT GGTGGCTTTT
GCCGGAGTGC TGGTGGGCTT CGTGCGTGGC GGGCTGTCGC TGGTCAACAT CATGGCCTCG
ACCTTCTTTG GCGCGATTTC CGGCTCGTCG GTAGCCGATA CCGCCTCGGT GGGCTCGGTG
CTGATCCCGG AGATGGAACG CAAGGGTTAC CCCCGCGAGT TCTCCACCGC CGTAACCGTC
AGCGGTTCGG TGCAGGCGTT GCTGACCCCG CCTAGCCACA ACTCGGTGCT GTATTCGCTG
GCGGCGGGCG GCACGGTGTC GATCGCCTCG CTGTTCATGG CAGGGGTGAT GCCCGGCCTG
CTGCTGAGCG CGGTGATGAT GGGCCTGTGC CTGTTGTTCG CCAAGAAGCG CAACTACCCC
AAGGGCGAAG TGATCCCGCT GCGCCAGGCG CTGAAAATTG CCGGTGAGGC GCTGTGGGGC
CTGATGGCCA TGGTCATCAT CCTCGGCGGT ATCCTGTCGG GGGTGTTCAC CGCCACCGAA
TCGGCAGCCG TGGCGGTGGT GTGGTCGTTC TTCGTGACCA TGTTCATCTA CCGCGACTAC
AAGTGGCGCG ACCTGCCCAA GCTGATGCAC CGCACAGTAC GGACCATCTC CATCGTGATG
ATCCTGATCG GCTTTGCCGC CAGCTTCGGC TACGTAATGA CGCTGATGCA GATCCCGTCG
AAGATCACCA CCGCGTTCCT GACCCTGTCG GACAACCGCT ACGTGATCCT GATGTGCATC
AACTTCATGT TGTTGCTGCT GGGCACAGTG ATGGACATGG CGCCGCTGAT CCTGATTCTT
ACCCCGATCC TGCTGCCGGT GATTACCGGT ATCGGCGTGG ACCCGGTGCA CTTTGGCATG
ATCATGCTGG TGAACCTGGG TATCGGGCTG ATCACCCCGC CGGTGGGAGC GGTGTTGTTT
GTCGGCTCGG CCATCGGCAA GGTGAGTATC GAGTCGACGG TGAAGGCGCT GATGCCGTTC
TACCTGGCGC TGTTCCTGGT GCTGATGGCA GTGACTTACA TTCCCGCGAT CTCGCTGTGG
CTGCCTAGCG TGGTGCTGTA A
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| Protein sequence | MEAFILLGSF IVLILIGMPV AYALGLSALI GAWWIDIPLQ AMMIQVASGV NKFSLLAIPF
FVLAGAIMAE GGMSRRLVAF AGVLVGFVRG GLSLVNIMAS TFFGAISGSS VADTASVGSV
LIPEMERKGY PREFSTAVTV SGSVQALLTP PSHNSVLYSL AAGGTVSIAS LFMAGVMPGL
LLSAVMMGLC LLFAKKRNYP KGEVIPLRQA LKIAGEALWG LMAMVIILGG ILSGVFTATE
SAAVAVVWSF FVTMFIYRDY KWRDLPKLMH RTVRTISIVM ILIGFAASFG YVMTLMQIPS
KITTAFLTLS DNRYVILMCI NFMLLLLGTV MDMAPLILIL TPILLPVITG IGVDPVHFGM
IMLVNLGIGL ITPPVGAVLF VGSAIGKVSI ESTVKALMPF YLALFLVLMA VTYIPAISLW
LPSVVL
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