| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1184 |
|---|
| Symbol | |
|---|
| ID | 5194109 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 1333827 |
|---|
| End bp | 1335815 |
|---|
| Gene Length | 1989 bp |
|---|
| Protein Length | 662 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640585642 |
|---|
| Product | fusaric acid resistance protein region |
|---|
| Protein accession | YP_001266529 |
|---|
| Protein GI | 148546427 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1289] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.476236 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.23816 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCCATCA CCTTTCAGGC CCTGTTCGCG CCCAACAGCC TCGCCCTCAA GTTTGCCATC
AAGACCCTGC TCGGTGGCGG CCTGGCGTTG TGGCTGGCGA TGCGCTGGGG GCTGGAGCAA
CCCTCCTGGG CATTGATGAC TGCTTTCATC GTCGCCCAGC CGCTATCGGG CATGGTGGTG
CAGAAAGGCT TGGCGCGGTT AGCCGGCACG TTGGTCGGCA CAGTCATGTC AGTGCTGTTC
ATCGGCCTGT TCTCCCAGAC CCCCGGGCTG TTCCTGCTTG CCTTGGCGCT GTGGCTGGCC
CTGTGTACCG CCGCGTCCAC CCAGTTGCGC AGCGCCTGGG CCTATGCTTT CGTGCTGGCC
GGCTATACCG CAGCGATCAT TGCCTTGCCG GCCATTGACC ACCCCCTGCA GGTATTCGAC
CAGGCCGTGG CGCGCTGTAC CGAGATCTGC CTGGGTATTT TCTGTGCAAC AGCCAGCAGT
GCCTTGCTCT GGCCCATGCG GGTCGAGCAG CAACTGGGCG GGCAGGCGCG GCAGGCCTGG
CAGAACGGCC TGCAGGCCGC CAGCGCCATG CTGGGCGGAG AGGACGAGGC GCGCAAAGGC
CTGCTGGAAA GCCTGGGACG CATCGTTGCC ATCGACAGCC AACGTGAACA TGCCTGGTTC
GAGGGCAATC GCGGGCGCCA ACGTGCCCGT GCCATTCGTG GCCTTAGCCA GAAACTGCTG
GTGTTGTTGC GTATTTCCCG TTCGGTGCGC CGCCAGTGGC GGCAACTGGA TGAGTGTGAG
GTCGAGCACT TGACGCCTTG GTTGCAGGAA GTGCGTACGC TGCTCGACCA ACCCGACCAG
CCCAGCCTGT TGTTGTTGCG TCAGCGTATC TGGGATGCCG CACACGACGA GCAGATCAGT
TCGGCGGAGC ACTTCTGCCT GGCGCGCATG GCCCTGCTAT TGGACTATGC CATGGCCGCC
AGCCAGGCAC TTGAGGATGT GGAGGCGGGC AGGGCGCCCA AGGACGTGTC CCAGGGGCTG
GCCGTGCACC GAGACTGGTC GCTGGCCTTG CTGTTCGGCT CGCGCAGTGC GCTGGCCTTC
CTGGTAATGA GTGGTTTCTG GCTGGCCACG GCCTGGCCTT CGGCACCAGG TGGCCTGGTG
CTGACCTGCG TGGTCTGCAG CCTGTTCGCC AGTCGCGAGA ACGGCGCACA GATCGGCCTG
AGTTTCCTGC GCGGGATATT CCTGGCGATA CCGGCGGCGT TTCTGGTCGG GCAGATCATG
CTGCCGCAAT GGAGCAGTTT CGCCATGCTC TGCCTGGGCA TGGGCGTGCC ACTGTTTCTT
GGTGCACTGG GCATGGCCCA TCCGCGTACC GGGGCTACGG CCACTTCCTA TTGCCTGCAC
TTCATTGTGC TGGTGTCGCC GCTCAACGCC ATGCAGTTCG GCGTGGCGAC CATGTTGAAC
AGTGCCTTGG CCATGCTGGT GGGGGTGTCG GCAGCGGTCA TGGCCTTCCG CTTACTGGTG
TTCCGCCACC CGGCCTGGCT GGGCCGGCGC TTGCGTGCTG CAACGCAGAA CGACTTGGTG
CGCCTGACCC GGCGCGACCT GCGCGGGGCT GACAGCTGGT TTGGCGGGCG CATGGCCGAC
CGGCTGATGC AACTGGCGCG GCATGCCAGT GAATTACCGG AAGGCGAACG CAAACGCTGG
GATGACGGCC TGCACGGGCT GGATATCGGC GACGAACTGG TGCACCTGCG CATGTGCCTG
GCGGTCGCCC AGGCCCCTTT GGGGCGGGCC GAGCGCGAGT ACCTGCAACA AGTGGAAGCA
GTGCTGGCCA AAGGGCCGGC TGCCGGGCGT GGGCAGCGGC TGGATGCTGC CAGTGAGCAG
TTCATTGCAG CCTTGCGTCG GCTGCCAGCC AGCGACCCGC TTCGCCTGGC CGAAGGGGCG
GTACTGCAAT TGCAGAAAAG CTGGGGCAAA TGGTGCCGCT GGCAGGAGGA CACCCATGGG
TTTGCGTGA
|
|---|
| Protein sequence | MPITFQALFA PNSLALKFAI KTLLGGGLAL WLAMRWGLEQ PSWALMTAFI VAQPLSGMVV
QKGLARLAGT LVGTVMSVLF IGLFSQTPGL FLLALALWLA LCTAASTQLR SAWAYAFVLA
GYTAAIIALP AIDHPLQVFD QAVARCTEIC LGIFCATASS ALLWPMRVEQ QLGGQARQAW
QNGLQAASAM LGGEDEARKG LLESLGRIVA IDSQREHAWF EGNRGRQRAR AIRGLSQKLL
VLLRISRSVR RQWRQLDECE VEHLTPWLQE VRTLLDQPDQ PSLLLLRQRI WDAAHDEQIS
SAEHFCLARM ALLLDYAMAA SQALEDVEAG RAPKDVSQGL AVHRDWSLAL LFGSRSALAF
LVMSGFWLAT AWPSAPGGLV LTCVVCSLFA SRENGAQIGL SFLRGIFLAI PAAFLVGQIM
LPQWSSFAML CLGMGVPLFL GALGMAHPRT GATATSYCLH FIVLVSPLNA MQFGVATMLN
SALAMLVGVS AAVMAFRLLV FRHPAWLGRR LRAATQNDLV RLTRRDLRGA DSWFGGRMAD
RLMQLARHAS ELPEGERKRW DDGLHGLDIG DELVHLRMCL AVAQAPLGRA EREYLQQVEA
VLAKGPAAGR GQRLDAASEQ FIAALRRLPA SDPLRLAEGA VLQLQKSWGK WCRWQEDTHG
FA
|
|---|
| |