Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_1175 |
Symbol | |
ID | 5193389 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 1323747 |
End bp | 1324862 |
Gene Length | 1116 bp |
Protein Length | 371 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640585633 |
Product | extracellular ligand-binding receptor |
Protein accession | YP_001266520 |
Protein GI | 148546418 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.343144 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCAAGA TTTCCAAGCT GTTCGCCGCA ATGGTACTGG CCGGGGTAGC CAGCCATTCG TTTGCCGCCG ATACCATCAA GATCGGCATC GCCGGTCCCA AGACGGGTCC TGTGACCCAG TACGGCGACA TGCAGTTCAT CGGCGCCAAG CAAGCCATCA AGGATATCAA CGCCGCGGGC GGCGTGGATG GCAAGATGCT CGAAGCCAAG GAATACGACG ACGCCTGCGA CCCTAAACAG GCCGTGGCAG TCGCCAACAA AGTGGTCAAC GACGGCGTCA AGTTCGTGGT CGGCCACCTG TGCTCCAGCT CCACCCAGCC TGCGTCCGAC ATCTACGAAG ACGAAGGCGT GATCATGATC ACCCCGGCCG CCACTTCGCC GGAAATCACC GCCCGTGGCT ACAAGCTGAT CTTCCGCACC ATCGGCCTGG ACAGCGCACA GGGCCCGGCC GCCGGCAACT ACATCGCCGA CCACGTCAAG CCGAAGGTCG TTGCCGTCCT GCACGACAAG CAGCAGTACG GTGAAGGCAT CGCCACCGCC GTCAAGCAAA CCCTTGAGAA GAAAGGCACC AAGGTTGCCG TCTTTGAAGG CCTGAATGCC GGTGACAAGG ACTTCTCCTC GATCATCCAG AAGCTCAAGC AGAACAACGT CGACTTCGTC TACTACGGCG GCTATCACCC AGAGCTGGGC CTGATCCTGC GCCAGGCTCA GGAAAAAGGC CTGAAAGCCA AGTTCATGGG TCCGGAAGGC GTGGGCAACG ACTCCATTTC GCAGATCGCC CAGAACGCTT CCGAAGGCCT GCTGGTCACC CTGCCGAAAT CGTTCGACGC AGACCCGGCG AACAAGAAGA TCGTCGACGC CATCAAGGCT GACGGCAAGG ACCCAAGTGG CCCGTTCGTA TTCCCTGCCT ACTCGGCTGT CGAGCTGATT GCTCAAGGCA TCAAGAAAGC CGGTTCCGAT GATACCGACA AGGTGGCCGA GGCCATCCAC AAAGGCACCT TCAAGACCCC GACCGGCGAA CTGTCGTTCG ACGACAAAGG CGACCTGAAA GACTTCAAGT TCGTGGTCTA CGAATGGCAC TTCGGCAAGC CGAAGACCGA AGTCTCCCCT CAGTAA
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Protein sequence | MIKISKLFAA MVLAGVASHS FAADTIKIGI AGPKTGPVTQ YGDMQFIGAK QAIKDINAAG GVDGKMLEAK EYDDACDPKQ AVAVANKVVN DGVKFVVGHL CSSSTQPASD IYEDEGVIMI TPAATSPEIT ARGYKLIFRT IGLDSAQGPA AGNYIADHVK PKVVAVLHDK QQYGEGIATA VKQTLEKKGT KVAVFEGLNA GDKDFSSIIQ KLKQNNVDFV YYGGYHPELG LILRQAQEKG LKAKFMGPEG VGNDSISQIA QNASEGLLVT LPKSFDADPA NKKIVDAIKA DGKDPSGPFV FPAYSAVELI AQGIKKAGSD DTDKVAEAIH KGTFKTPTGE LSFDDKGDLK DFKFVVYEWH FGKPKTEVSP Q
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