Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_1117 |
Symbol | |
ID | 5194652 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 1264672 |
End bp | 1265523 |
Gene Length | 852 bp |
Protein Length | 283 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640585575 |
Product | MIP family channel protein |
Protein accession | YP_001266462 |
Protein GI | 148546360 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0580] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) |
TIGRFAM ID | [TIGR00861] MIP family channel proteins |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.178893 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGACTG CTCTGCGCCA ACCCACACTG TCCAGCCAAT GCCTGGCCGA GTTTCTCGGC ACCGCCCTGC TCATCTTCTT CGGTACCGGC TGCGTCGCCG CGCTCAAGGT GGCCGGCGCC AGCTTCGGGC TTTGGGAAAT CAGTATCATC TGGGGTGTGG GCGTCAGCAT GGCCATCTAC CTCACCGCCG GTATTTCCGG TGCGCACCTG AACCCAGCCG TGAGTATCGC CCTCACACTG TTCGCAGGGT TCGACAAGCG CAAGCTGCCC TTCTACATGC TGGCCCAGGT ATGCGGCGCA TTCTGTGGCG CAGCACTGGT CTACACGCTG TACAGCAATC TGTTCTTCGA TTTCGAACAA GCCCACGCCA TGCTGCGCGG TAGCGAAGGC AGCCTTGAGC TGGCCTCGGT GTTCTCCACC TACCCGCACC CGTCGCTGTC CACCAGCCAG GCGTTTCTGG TCGAAGTGGT GATCACTGCC ATTCTGATGG CCGTGATCAT GGCCCTGACC GACGACAACA ACGGCCTGCC GCGCGGCGCC ATGGCCCCGC TGCTGATCGG CTTGCTGATT GCAGTGATTG GCAGCGCCAT GGGCCCATTG ACTGGCTTTG CGATGAACCC GGCCCGCGAT TTCGGGCCAA AACTCATGAC CTTCCTGGCC GGTTGGGGCG AAATCGCCTT CACTGGCGGG CGGGATATTC CCTATTTCCT GGTTCCGGTA TTTGCACCGA TCCTTGGCGC CTGCTTGGGT GCAGCGAGCT ATCGCGGCCT GATTGCACGC AACCTGCCAA TGGCGCCCGC CGCGACCCCT GAGACAAATG ACATTCGCCA GGGCGATACT CAAGCCAATT GA
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Protein sequence | MTTALRQPTL SSQCLAEFLG TALLIFFGTG CVAALKVAGA SFGLWEISII WGVGVSMAIY LTAGISGAHL NPAVSIALTL FAGFDKRKLP FYMLAQVCGA FCGAALVYTL YSNLFFDFEQ AHAMLRGSEG SLELASVFST YPHPSLSTSQ AFLVEVVITA ILMAVIMALT DDNNGLPRGA MAPLLIGLLI AVIGSAMGPL TGFAMNPARD FGPKLMTFLA GWGEIAFTGG RDIPYFLVPV FAPILGACLG AASYRGLIAR NLPMAPAATP ETNDIRQGDT QAN
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