| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1113 |
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| Symbol | |
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| ID | 5195426 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 1256086 |
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| End bp | 1260405 |
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| Gene Length | 4320 bp |
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| Protein Length | 1439 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640585571 |
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| Product | leucine-rich repeat-containing protein |
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| Protein accession | YP_001266458 |
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| Protein GI | 148546356 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.469276 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACCGC ACCGGCCCCC GAACGATTCC ATCGATAGCC TGATTGCCCA AAACTTGCCT
GGATGGCTAG TCGACCACGC GCAACCGGAA AGGCTCGATG CGTTACGAAA CGCCCTGCGG
CGGCAGGCGA ACTGTAATGC GCGGCTTGGC CCAATCCTCC AGGCCATCCC TTCTTTGCAG
GCCTACGCAG CAGCGTTGCT CAAAACGAAA CTGCGCAAGA GCGGCTTCAG CAACCCGGAC
GTGACGGGCT GGAGGGTACG GGTCTCGCAG CGGCTGTTGC TGCCCAGCGC TTCGCCTGTG
CTGCTGCGGC CCACCTATGT TCGCCGCTCC AGGCGGTCAT TGCTGGAGGC GGCGCTGCAT
AACTATCATC GCAGGGAGAC ACGCCCCGGG CTCACGCTCA AAGGTGAACT GGTCGATGGC
AACGGTAACC GGCTGCCGAT GAGCTTCCAC GCGTTTGCCT CCGCATGTCG CGAGGTTGAC
GCAGGGGGCA AGTACCAGGC GTTGCTTTCA CACCATCTAC AGCCTGAAGA TGGCCCTGAG
GATGAGCCGG GCCAGGCCGT TTCCCGCTTG CACGGGCTGT TCGAAGCGAG TTTCAAGGCC
CATTTCGAGG TGGCGATGCG GGTCGCTGCG TTGAAACAGG ACATTGACGA GCGCACGTAT
TTTTTTCTGT TGCCACTTAT TGCCGAGAAG CCGGTGGTGC CTGCGCTGGT TGGCACTGTG
GTGCCCCGAC AGTTGTACCT GCTGGGCCGC CCGGTTCAAG GCGTGCTGAC GCTGGAAGTG
CGTCCGTCAG CTGACGCAGT GGAGTCGGTG GTGCTCTGGA TACCCGATGA CCCTCATCAG
CCCGTCTCCC GTCATGCCAG CTGGGATGCA CTCGACAAGT ACCTCGGTAA GCGCTTCCGT
GCGCCGGCCT ATCGGCGCTT TTTCGCGCGC TTCATTACCG AGCGTGAGCG CATCAATTTC
TATCGGGTAT TGAACGAACG GGTTGCGCAG GCATCGGCAG CCGGGGTGGA GCTCGATGCC
CGTTCTGCAC CGATCACTGA CGCACCGTTC GTACACCTGC GCCGGCAACA CCTTGCCAAG
ATCAGGGATG ACGCCAAGGT GCTCGCCGTG CCCACCGATG TCGAAGATGA TGAAGACCGC
GAAGCGCGCA TGCAGGGCTA CAAAGAGCTG GGTATGAACT TGCTGAATGT GGCGGGGGCT
TTCGTGCCTG TGCTTGGCGA AGTGCTGCTG GTGGCAAACG CCGTTCAGAT CGCTGACGAA
GTGTATGAAG GGTATGAAGA CTGGCGCATG GGTGATCGCG AAGGGGCGTT GAACCACCTG
TTCAACGTTG CCGAGAACGT CGTGCTCGGC GGGATGATCG CCGCCGGCAG CCAAGTGGCC
GTGCGTGCCC TTGAGCGTCT GGCCTTCGTC GATGATTTGG TACCGGTGTG CACCTCCGCA
GGCAAGGTCA AGCTCATGGC CACGGATCTA CCCGGTTACG ATGCCCAACC GTTGCGGGGT
GCTGGCGCAC AGGAATGGTT ATGGCACCTC GATGAGAGCC GTTATCGGGT GTTGGAGGAT
CCGCAGGATG GTCGCGCCAG GATCCTGCAC CCTGGTCGTC CCAGTGCCTA TCGGCCTGTG
ATGGAGCAGA ATGGCGCCGG CGGCTGGCGC CACGAACTGG AAGCTCCCCA ATACTGGGAA
GGGCGGGCCA ATCTGGTGCG CCGCCTGAGT ACGCCCCTGG CAGAGCTACC GGAACCGACA
TGCGACTACC TGCTCCAGGT GACAGGGCTG AGTGAAGCGC AGGTTCGCCG TTTACACGTT
GAGCACATGG GCGCACCTGC ACGGTTGCTC GATGCCCTGG AGCTATATCA GGCACATGAA
TTCCACCCGG ACTTCAGCGC GCCGCGACTT GCGCAGTACG TTGCTGATCG GCAAGTGCAG
CCCAATGGCA TCGAGCGGAT ATTGCGGCGC ACTTTCCCCG GCCTGTCGGC TCGCTGTACC
CGTGAGCTGC TTCAGCAATG CAGCGGTGCG CAGCTCGATA CACTCAGCAC CGCGCAGCGG
ATCCCTTTGG CAGTGGCCGA GCGTGCACGA TGGTCGCTGC GCGAAAGCCG TCTGGACAGG
GCCTGTGCCG GTTTGCGCCT GCCGCGTTGC GTCAATCCGG ACACCGAACG CCTGGCTTTG
GGCTTGCTCG AGCGTCAGCT GAAATGGCCG GACACCCTGC GCATCGAACT GCGCGAAGGT
AGCCCGAGTG GCCGGTATCT GGCCGGTATC GGCGCAGAGT CTGCGCAGGA TGTACGGTGT
ATCGTGCGCC GCGGCGACGG CTACCGCTAC GCCGGTCAAG GCACATCCGG CCCCTACCTG
GCGGCACTGT TGGCTGCGCT GGACGATACG CAGACAGCCG ATCTCGGCGA TGCCGCTGTC
AGTCCAGGCG CCCTGGGCTC GTTGCTGATC GAGGCCGCTG CCGGTGATCG CACCCAAGCG
GCTGAGCTCT GCGGCATGCC GCGTCTGGGT GTTGGCCTGC GACCCCCGAC CCGTTTTGGA
GATGGGCGTA TCGGGTATGC CTTGAGTGGG CGAGGCGAGA GCAGTCGGCG TGCCATAGGG
CGTGGTATTC ACCAAGTGTT TCCGACGATG ACAGACGGGG AGCTACAAGC CTATCTGCTT
GCCCTCATGG AGCGGCGAGT AGGGTTGTGG GAGCACTACA GCCAGCTCAC GGGGCAGTTG
ACACGCCTGC GTCAGAGCCT GCGTCAGTGG CGCAGGGATG CCAGTAACCC ACTGGACGCG
CTGCGCCGCC GTCGGGTCGC TACTGCCATA CGGCGAAGCT GGCGGCGCAA GATAACCGAC
GAGGCCGGGG ACTACGCGCT GATCATCAGC GGAGAGCGTA TCGGTAGTCT GCCCGAATTA
CCGGAGGGGG TGAGCTTTGA TCATGTGCGA CGGCTGATCC TCAGTGACCT GCGCCTTGGT
GAAATCAATG GAGACTTCCT TCGACGTTTT CCCAACCTGA TTGAGCTCGA CCTGTCCGGC
AATCGCCTGA CTGCGATCCC TCACGGCATT GAACATATGC CCCGCCTGCG GCAGCTAAAC
CTGCGTCGCA ACAGCGTGAT AATGGATGAG GCCGGTGAAT TGCGTCTTGC CGGGATGAGC
GCGCTGCGGT ACCTCGACCT CAGCCACAAC CCGCTGGGAA GGGCGCCGGT ACTGACGCGC
CTGGGCAATT TGCGTGAAGT CAACTTGCGC TCTGCTGGCC TTGAGGCGTT GCCTGAGCGG
ATTTCATTTC GTGCCCACAT AGACTTGCGA AACAACAACA TTCGCACGCT GCGCCGAGAG
TTGCAGCAGC TGCGCCTGCA GGTGCACCAG TTGTCCTTGC ACGATAATCC ACTTGGCGAA
GCTGACGCAT TACTGCTTGA TGAGGCTCGA GGTGTAACCC CAGGGCAGTG GGGGTCAGCG
TCCGCACGCC ATCGCGCCAT TGACAGTGAC CTGTTCAATA CCTGGGCCAA CAGCACAGCC
GACGCTGAAC GTGATCGCCA GCAGGCCATA TGGACAGCGC TGCTTGAGGA ACCGCACTCA
GATGGAATGT TCCGCTTTCT GGCAGACTTC GTTCACGGCG AGGACTTTGA GCAGCACCCT
GGGCATTACC GCAGCCGAAT CTGGCGAATT CTGGAAACGT GTGAGCAGCA CGAGCAGTTG
CGTCATCAGT TGTTTCTCGA GGCATCTGGC CCCCGCAGTT GTGAAGACCG CCTGCTGCTG
TTGCTGGAGC AGATGGAGCT TGGGGTTCTG GTGCTGCGCG CCGTCGAAGA CGCGCATGGC
AGTCGGATGG AAGCTCGCTT GCTAAGCCTG GCGCGTGGTT TGTTTCGCCT GGACGAGGTC
GACCGTCACG CGACGTTGCA CGTGCAACGC ATGCATGCCG AGCACGCCCC TCATGTCGAT
GAAATCGAGA CACGGCTTTT TTACCGACAG CGGCTTGCGC GTCCGTTGGG CTTGCCGATC
GAGCTCGACG AAATGCACTA CCCAGGTTTT GCAAACGTAA CCACCAGCGA TGTGTTGCGG
GTCCAGGACG CGGTTTTGCA AACTGAGACG ACGGATGCCC TGATAGCCTC GTTGGCACAG
CGGCCTTTCT GGGAGCAATA CGCGCGCGAG TTTCATGCGC AGCGATTTGA AGACCTGGTA
CAGCCACTGC ACCAGCGGAT GGAGGCCCTG CAGGCTCAGG TAGATGAGCA AGTGATCAGC
GAAAACGAGT TTCTGCAACG CTGTGAAGCA CTGAAGGCTG ATTTCGATCG CAGCGAGCGG
GCATTGCTGG CGCGGTTGGC GCGGGAAGCC TATGAGCGCT GGGCGAATAC GCCCCCTTGA
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| Protein sequence | MSPHRPPNDS IDSLIAQNLP GWLVDHAQPE RLDALRNALR RQANCNARLG PILQAIPSLQ
AYAAALLKTK LRKSGFSNPD VTGWRVRVSQ RLLLPSASPV LLRPTYVRRS RRSLLEAALH
NYHRRETRPG LTLKGELVDG NGNRLPMSFH AFASACREVD AGGKYQALLS HHLQPEDGPE
DEPGQAVSRL HGLFEASFKA HFEVAMRVAA LKQDIDERTY FFLLPLIAEK PVVPALVGTV
VPRQLYLLGR PVQGVLTLEV RPSADAVESV VLWIPDDPHQ PVSRHASWDA LDKYLGKRFR
APAYRRFFAR FITERERINF YRVLNERVAQ ASAAGVELDA RSAPITDAPF VHLRRQHLAK
IRDDAKVLAV PTDVEDDEDR EARMQGYKEL GMNLLNVAGA FVPVLGEVLL VANAVQIADE
VYEGYEDWRM GDREGALNHL FNVAENVVLG GMIAAGSQVA VRALERLAFV DDLVPVCTSA
GKVKLMATDL PGYDAQPLRG AGAQEWLWHL DESRYRVLED PQDGRARILH PGRPSAYRPV
MEQNGAGGWR HELEAPQYWE GRANLVRRLS TPLAELPEPT CDYLLQVTGL SEAQVRRLHV
EHMGAPARLL DALELYQAHE FHPDFSAPRL AQYVADRQVQ PNGIERILRR TFPGLSARCT
RELLQQCSGA QLDTLSTAQR IPLAVAERAR WSLRESRLDR ACAGLRLPRC VNPDTERLAL
GLLERQLKWP DTLRIELREG SPSGRYLAGI GAESAQDVRC IVRRGDGYRY AGQGTSGPYL
AALLAALDDT QTADLGDAAV SPGALGSLLI EAAAGDRTQA AELCGMPRLG VGLRPPTRFG
DGRIGYALSG RGESSRRAIG RGIHQVFPTM TDGELQAYLL ALMERRVGLW EHYSQLTGQL
TRLRQSLRQW RRDASNPLDA LRRRRVATAI RRSWRRKITD EAGDYALIIS GERIGSLPEL
PEGVSFDHVR RLILSDLRLG EINGDFLRRF PNLIELDLSG NRLTAIPHGI EHMPRLRQLN
LRRNSVIMDE AGELRLAGMS ALRYLDLSHN PLGRAPVLTR LGNLREVNLR SAGLEALPER
ISFRAHIDLR NNNIRTLRRE LQQLRLQVHQ LSLHDNPLGE ADALLLDEAR GVTPGQWGSA
SARHRAIDSD LFNTWANSTA DAERDRQQAI WTALLEEPHS DGMFRFLADF VHGEDFEQHP
GHYRSRIWRI LETCEQHEQL RHQLFLEASG PRSCEDRLLL LLEQMELGVL VLRAVEDAHG
SRMEARLLSL ARGLFRLDEV DRHATLHVQR MHAEHAPHVD EIETRLFYRQ RLARPLGLPI
ELDEMHYPGF ANVTTSDVLR VQDAVLQTET TDALIASLAQ RPFWEQYARE FHAQRFEDLV
QPLHQRMEAL QAQVDEQVIS ENEFLQRCEA LKADFDRSER ALLARLAREA YERWANTPP
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