Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_1108 |
Symbol | |
ID | 5192827 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 1250568 |
End bp | 1252472 |
Gene Length | 1905 bp |
Protein Length | 634 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640585566 |
Product | integral membrane sensor signal transduction histidine kinase |
Protein accession | YP_001266453 |
Protein GI | 148546351 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.287066 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATGCG ATCCCTCGCT ACTTCGCCCT GCCAAGCCTG CCGTGAATTC CCGCCTGATC CGTCAATTGC TGTTACCACC ACTGATCATC CTGCTGATGG TCGGCCTGGG AATGGCTGGC TACCTGATCA GCGAGAGCAA TGGTATCCGC GCCCTCAGCG AAAACGGCGA ACGCCAGCTG GAGCTGCATG CACGCACGGT CGAAAGCGAA ATCAGCAAGT ACACCTACTT GCCGAGCCTG CTGGAGCTGG AAGACAGCGT CTCGCACCTG CTCACCGACC CGGACGGCGC TTCACGCCAG ACGGTCAACG AATACCTTGA AGGCCTGAAC CGTCGCAGTC GCAGTCGGGC CATCTTCGTC CTCGACACCA ATGGCCGGGT GCAGGCCACC AGCAACTGGC GCGATGCCGA CTCGTTCCTG GGTGAAGACC TGTCGTTCCG CGCCTACTTC CAGACTGCCG TGCGCGGCGA GCCCGGGCGT TTCTATGGCA TCGGCAGTAC CACTGGCGAG GCTGGCTATT ACCTGGCCCA TGGCCTTGAG GAGCACGGCA AGATCATAGG CGTTGCGGTG ATCAAGGTGC GCCTGGACAC CCTCGAGGAG CGCTGGCAGC GTGCCCGCCT GGAGGCGTTC GTCAGCGACG AGAATGGCAT CATCATTCTC TCCAGCGACC CGGCCCGGCG TCTTAAGTCG GTGCGCCCGC TGACCCCGCA AATCAAAGAG CGCCTGGCGC GAAGCCTGCA ATACTACTGG TGGCCGCTGA ACGAATTGCA GCCTCTGGCC CGGGAAACCC TGGCCGATGG TGTGGAAAAG CTGACCTTCC CGGCCAACAC CGAAACCGCT CATGGCAAAC CGCACGAAGT GGCCTACCTG GCGCAAACCA GGCGCCTGGT CGACACGCCC TGGCATTTCA CCCTGCTGAC CCCACTGCAG GACCTGCGTC GCGAATCCAT GGTGCAGGGC ATTCTGGTGG GCGTGGCCTT TGCCTTGCTG GCGATCCTCG GCATTGCCTG GAACGAGCGG CGCAAAGTGA TCGCCACACG CCTGGCGGCC CGCGAAGCCC TTGAAGAGGC CAACAGCCAG CTGGAGCGGC GGATTGCCGA ACGCACCGCC GACCTGCGCG CCAGCAACGA ACGCCTCAAG GGCCAGATTC GCGAGCGCCG GCATGCCGAA CAGACCTTGC GCCACGCCCA GGATGAGCTG GTGCAAGCAG GTAAGCTGGC CGCCATCGGG CAAATGTCTA CCAGCATTGC CCACGAGCTG AACCAACCCT TGGCTGCGCT GCGCACCTTG TCTGGCAATA CGGTGCGCTT CCTTGAGCGC GGGGCGCTGG AAACCGCCAG CACCAACCTG CGCACCATGA ATGACCTGAT CGACCGCATG GGCCGCATCA CCGCCAGCCT GCGCTCGTTC GCCCGGCGCG GCGATGACAG CGGCCAGGCT TCACTGGCCA AGGCGGTAGA GGCCACCCTG CAGGTGCTGG CCAACCGCGT CAGTGCCTGT CACTTGCAAT TGCACCATCA GTTCGAGGAC CAGCAACTGG CCATCGACCA AACCCGCCTG GAGCAGATTC TGGTCAACCT GATCGGCAAC GCCCTTGACG CGATGGCCGC GCAACCGCAG CCTGAGCTGT GGCTGGAAGG CGAGTTGCAG GGCGACAAGT ACCGTTTGCA GGTGCGCGAC AACGGCCACG GTATTGACGC CGAAGCGCGC AAGCACCTGT TCGAACCCTT CTTTACCACC AAACCGGGCG AGCATGGCCT GGGCCTGGGC CTGACCTTGT CGGCTTCCCT TGCCGCCGCC GCCAAGGGAA GCCTCAACGT CGAGCATCCC GCCACCGGCG GCACAGCCTT CGTCCTGGCC TTGCCCCTGG TTTCCCCCCC TAGCGAATCG GCAGAGCATC CATGA
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Protein sequence | MKCDPSLLRP AKPAVNSRLI RQLLLPPLII LLMVGLGMAG YLISESNGIR ALSENGERQL ELHARTVESE ISKYTYLPSL LELEDSVSHL LTDPDGASRQ TVNEYLEGLN RRSRSRAIFV LDTNGRVQAT SNWRDADSFL GEDLSFRAYF QTAVRGEPGR FYGIGSTTGE AGYYLAHGLE EHGKIIGVAV IKVRLDTLEE RWQRARLEAF VSDENGIIIL SSDPARRLKS VRPLTPQIKE RLARSLQYYW WPLNELQPLA RETLADGVEK LTFPANTETA HGKPHEVAYL AQTRRLVDTP WHFTLLTPLQ DLRRESMVQG ILVGVAFALL AILGIAWNER RKVIATRLAA REALEEANSQ LERRIAERTA DLRASNERLK GQIRERRHAE QTLRHAQDEL VQAGKLAAIG QMSTSIAHEL NQPLAALRTL SGNTVRFLER GALETASTNL RTMNDLIDRM GRITASLRSF ARRGDDSGQA SLAKAVEATL QVLANRVSAC HLQLHHQFED QQLAIDQTRL EQILVNLIGN ALDAMAAQPQ PELWLEGELQ GDKYRLQVRD NGHGIDAEAR KHLFEPFFTT KPGEHGLGLG LTLSASLAAA AKGSLNVEHP ATGGTAFVLA LPLVSPPSES AEHP
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