| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1089 |
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| Symbol | |
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| ID | 5190559 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 1228111 |
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| End bp | 1229313 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640585547 |
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| Product | general secretion pathway protein F |
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| Protein accession | YP_001266434 |
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| Protein GI | 148546332 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.419193 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.264325 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGACCT ATCGCTACCA GGCCGTTGAC CTCGCCGGCA AATCGCACAA GGCCAGCCTG
CAGGCTGACA GTGAACGCCA CGCCCGCCAG CTGCTGCGCG AGCAGGGCCT GTTCGCCCGC
CAGTTGCAGC GCCATGAAGC CGGCAGCCGA CAACCCCGAC GCCAGCGCTT GAGCCGCGCC
CAGTTGTGTG AGCTGACCCG TCAGCTGGCC ACCTTGACCG GGGCCGGCAT TCCCTTGGTC
GATGCCCTTG CCACCCTTGA ACGGCAACTG CGTCAACCCG CCTTGCACAG TGTGCTGGTG
GCCTTGCGCG GCTCACTGGC CGAAGGCCTG GGCCTGGCCC GCAGCCTGGC CCGGCAGGGC
GCACCGTTTA CTGGCCTGTA CTGCGCGCTG GTCGAGGCCG GCGAACGTTC CGGGCACCTG
GCCCAGGTGC TGACCCGCTT GGCCGACCAC CTGGAGCAGG TGCAACGCCA GCAACACAAG
GCCCGCACAG CGCTGATCTA CCCCGCTGTG CTGATGGGTG TGTCGCTGGC AGTGGTGATT
GGCCTGATGA CGTTCGTCGT GCCCAAACTC ACCGAGCAAT TTGCCCACGC CGGGCAAAGC
CTGCCGCTGA TCACCTCGTT GCTGATCGGC CTGAGCCAGG GGCTGGTGCA CGCCGGGCCC
TGGTTGTTAG GGGGGGCGCT GTTGCTCGGG GGGCTGGCTG GCTGGCTGCT GCGCAAACCG
CACTGGTGCC TGCGTCGCGA CCAGCTGCTG CTGCGCCTGC CGCGTATTGG CAGCCTGCTG
CAGGTGCTGG AGAGCGCGCG CCTGGCGCGC AGCCTGGCGA TTCTCACTGG CAGTGGCGTG
GCCCTGCTCG AAGCCTTGCA AGTGGCCACC GAAACCATCG GCAACCGGCG TATCCGCCTG
GCCATGGAGC AGGTGCGCCA ACACGTGCAG GGCGGCACCA GCCTGCACCG TGCGCTGGAT
GCCAGCCAGC AATTCCCGCC GCTGCTGGTG AACATGGTCG GCAGCGGCGA GGCCAGCGGC
ACCCTGGCGG ACATGCTCGA GCGCGTGGCC GACGACCAGG AGCGCGGCTT TGCCCGCCAG
GTCGATACCG CCATGGCGCT GTTCGAACCC CTGATGATCC TGGTGATGGG CGCCGTGGTG
CTGTTCATCG TGCTGGCGGT GCTGCTGCCG ATCATGCAAC TCAACCAGGG CCTGCAATTG
TGA
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| Protein sequence | MPTYRYQAVD LAGKSHKASL QADSERHARQ LLREQGLFAR QLQRHEAGSR QPRRQRLSRA
QLCELTRQLA TLTGAGIPLV DALATLERQL RQPALHSVLV ALRGSLAEGL GLARSLARQG
APFTGLYCAL VEAGERSGHL AQVLTRLADH LEQVQRQQHK ARTALIYPAV LMGVSLAVVI
GLMTFVVPKL TEQFAHAGQS LPLITSLLIG LSQGLVHAGP WLLGGALLLG GLAGWLLRKP
HWCLRRDQLL LRLPRIGSLL QVLESARLAR SLAILTGSGV ALLEALQVAT ETIGNRRIRL
AMEQVRQHVQ GGTSLHRALD ASQQFPPLLV NMVGSGEASG TLADMLERVA DDQERGFARQ
VDTAMALFEP LMILVMGAVV LFIVLAVLLP IMQLNQGLQL
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