| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1087 |
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| Symbol | |
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| ID | 5194845 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 1224905 |
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| End bp | 1226659 |
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| Gene Length | 1755 bp |
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| Protein Length | 584 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640585545 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001266432 |
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| Protein GI | 148546330 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.57571 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.616621 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGTTA GATACTGCAT GGCGGCTGCG CTGAGCCTGG CCTTGTCCAT GGCCTATGCC
CAAGAGCCGG TGTTCGATGA CAACGGTACG CCGATGTACG AAGTGAACTT CGTTGATACC
GAACTCGGTG AGTTCATCGA CAGCGTGTCG CGTATCACCG GCACCACCTT CATCGTCGAC
CCCCGGGTCA AGGGCAAGGT CACCGTGCGC ACTGTCGACC TGCACGACGC CGACGCCATC
TACGACATCT TCCTGGCCCA ACTGCGTGCC CAGGGCTATG CCACCGTCGA CCTGCCCAAT
GGCAGCGTGA AAATCGTACC CGACCAGGCC GCGCGCCTGG AGCCGGTGCC GGTAGAGGCG
GGCGGGCAGC AGGGCGAGGG CAGCGACAGC GTGGCCACCC GCGTATTCAG CGTGCGCAAC
GCCGCCAGCG AACAGGTACT GGGCATCCTC AAACCGCTGA TCGACCCGCG GGTTGGGGTG
ATTACACCGT ACCCGGCGGC GCACCAGTTG GTGGTGACTG ACTGGCGCAG CAACCTCGAA
CGCATCGCCA GCCTGCTGCG CCAGCTCGAC CGCCCTCAAG AGGCACCGGG CAACGGCAGC
ACCCAGGTGA TCTACCTGCG CCATGCCAAT GCTGGTGAAG TGGTCAAGGT GCTGCGAGGG
CTCAGCCAGG AAGGGGCGGT GCCGGCTGAA GGCGCGGGCG AGGCAGAGGG CAAGGACCGG
CCGGTGATGC CAGCCTCCGG TGGCCCGGGT ATCCGCCTGG AATACGAAGA AGGGACCAAT
GCCGTGGTCA TGGTCGGCCC CGACAGCGAG CTGGCAGCGT ACCGGGCCAT TGTCGAGCAA
CTGGACATTC GCCGTGCCCA GGTGGTGGTC GAAGCGATCA TCGCCGAGGT GTCCGACAGC
AGCGCCCAGG AGCTGGGCGT GCAGTGGCTG TTCGCCGACG AGAAGTTCGG TGCCGGTATC
GTCAACTTCG GCAGTAACGG GGTGAATATC GCCAGCATTG CCGGGGCCGC CGCGAGTGGC
GACAGCGAGG CCCTGGGTGA CCTGTTGTCC ACCACCACCG GTGCCACGGC GGGCATTGGC
CATTTCGGCG GGGGCTTCAA CTTCGCCATG CTGATCAACG CGCTGAAGGG CAAGAGCGGC
TTCAACCTGC TGTCCACGCC CACCTTGCTG ACCCTGGACA ACGCCGAGGC ATCGATCCTG
GTTGGCCAGG AAGTGCCCTT CGTCACCGGC TCCGTGACGC AGAACAACGC CAACCCGTAC
CAGACCATCG AGCGCAAGGA AGTCGGGGTG AAGCTGCGCA TCAAGCCGCA GATCAATATC
GACAACAGCG TGCGCCTGGA CATCGTTCAG GAGGTGTCGT CGATTGCCGA CACCAGTTCG
GCCAGCGACG TGATCACCAA CAAGCGCGAG ATCAAGACCA AGGTCATGGT CGAGGACAAC
GGCCTGGTGA TACTTGGCGG CCTGATCAGC GACGAGTTGA GTACCAGCAA CCAGCGTGTG
CCGCTGCTCG GCGACATTCC TTATCTTGGC CGGTTGTTCC GCTCCGATGC CACCAGGAAC
ACCAAGCAGA ACCTGATGGT GTTCATCCGC CCGCGCATTC TGCGCGACGG CCCGAGCCTG
GCGGGCCTCA GTGAAGACAA GTACCGCACC CTGCAGCAGA CCACACCGCT GCAATTGCCG
GACCTTGCAG AGGGCACGCG GCTGTTGCAG GTATTCCCCG CCAGCCGCGC ACGCCTGGAA
GGCGGTGACT GGTGA
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| Protein sequence | MPVRYCMAAA LSLALSMAYA QEPVFDDNGT PMYEVNFVDT ELGEFIDSVS RITGTTFIVD
PRVKGKVTVR TVDLHDADAI YDIFLAQLRA QGYATVDLPN GSVKIVPDQA ARLEPVPVEA
GGQQGEGSDS VATRVFSVRN AASEQVLGIL KPLIDPRVGV ITPYPAAHQL VVTDWRSNLE
RIASLLRQLD RPQEAPGNGS TQVIYLRHAN AGEVVKVLRG LSQEGAVPAE GAGEAEGKDR
PVMPASGGPG IRLEYEEGTN AVVMVGPDSE LAAYRAIVEQ LDIRRAQVVV EAIIAEVSDS
SAQELGVQWL FADEKFGAGI VNFGSNGVNI ASIAGAAASG DSEALGDLLS TTTGATAGIG
HFGGGFNFAM LINALKGKSG FNLLSTPTLL TLDNAEASIL VGQEVPFVTG SVTQNNANPY
QTIERKEVGV KLRIKPQINI DNSVRLDIVQ EVSSIADTSS ASDVITNKRE IKTKVMVEDN
GLVILGGLIS DELSTSNQRV PLLGDIPYLG RLFRSDATRN TKQNLMVFIR PRILRDGPSL
AGLSEDKYRT LQQTTPLQLP DLAEGTRLLQ VFPASRARLE GGDW
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