| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1065 |
|---|
| Symbol | |
|---|
| ID | 5193862 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 1196844 |
|---|
| End bp | 1198517 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640585523 |
|---|
| Product | 2-isopropylmalate synthase |
|---|
| Protein accession | YP_001266410 |
|---|
| Protein GI | 148546308 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00970] 2-isopropylmalate synthase, yeast type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATGC TCAAAGACCC TTCGAAGAAA TACCGCGCTT TCCCGACCAT CGACCTGCCT
GACCGTACCT GGCCGTCGAA GACCATCACC CAGGCACCTA TCTGGTGCAG TTCCGACCTG
CGTGACGGCA ACCAGTCGCT GATAGAGCCG ATGGACTCGG AGAAGAAACT GCGCTTCTGG
AAGACCTTGG TGCAGGTTGG CGTGAAGGAG ATCGAAGCCT CGTTCCCGTC TGCCTCGCAA
ACCGATTTCG ACTTTGTGCG CACCCTGATC CAGGACGGCC ACATCCCGGA TGACACCACC
ATCCAGGTGC TCACCCAGGC ACGTGAAGAC CTGATTGCCC GCACCTTCGA ATCGCTGCGC
GGTGCGAAGA AGGCCATCGT CCACCTGTAC AACGCCACCA GCCCGTCGTT CCGCCGCATC
GTCTTCAATC AGGACAAGCA AGGCGTGAAG GACATCGCGG TGAACGCGGC CAAGCTGTTC
GTCAAGTACG CCGCTCAGCA GCCGGAAACC CAGTGGACCT TCCAGTACTC GCCAGAAACC
TTCAGCGCCA CTGAAATGGA GTTCGCCAAG GAAGTCTGCG ACGCGGTCAT CGAGGTGTGG
AACCCTACCC CTGAACACAA GATCATCCTC AACCTGCCGG CCACCGTGGA AGTGTCCACG
CCAAATATTT ACGCCGACCA GATCGAGTGG TTCTGCCGCA ACGTCAGCCG CCGCGACAGC
GTGATCATCA GCCTGCACTG CCACAACGAC CGCGGCACCG GCATCGCTGC CACCGAACTG
GGCCTCATGG CCGGCGCCGA CCGTGCCGAA GGCTGCCTGT TCGGCAACGG CGAGCGTACC
GGTAACGTCG ACCTGGTGAC CTTGGCACTG AACCTCTACA CCCAGGGCAT CGACCCGTTG
CTTGACTTCT CCGACATCGA CGGTGTGCGC AAGGTGGTCG AAGAGTGCAA CCAGTTGCCA
GTACACCCAC GTCACCCGTA TGTGGGCGAC CTGGTCCATA CCGCGTTCTC CGGCTCGCAC
CAGGACGCCA TCCGCAAGGG CTTCGCCAAG CAGCAGGATG GGGAACTGTG GGAGGTGCCT
TACCTGCCGA TCGACCCGGC CGACATCGGC CGCAGCTACG AAGCGGTAAT CCGCGTCAAC
AGCCAGTCGG GCAAAGGCGG TATTACCTAC CTGCTCGAGC AGGAATATGG CATCAGCCTG
CCGCGTCGCA TGCAGATCGA ATTCAGCCAG GTGGTGCAGG GTGAGACTGA CCGCCTGGGC
CTGGAAATGA CCGCCCAGCA GATCTACAGC CTGCTGCACA AGGAATACCT CCAGGCCAAC
GCGCCATACG CACTGGTCAG CCATCGCCTG CAGGAAGAAA ACGGCCACAG CGCTGTGGAA
GTGGAAGTTG CCGGTGAAGG CGAAACCACC CTGCACTGGC GCGGCAAGGG CAACGGCGCC
CTGGAAGCAC TGGTGGCCGG CCTGCCGATT GCCGTGGAGA TCATGGACTA CAACGAGCAT
GCGATTGGTG CTGGCACCAA CGCCAAGGCA GCTGCCTACA TCGAACTGCG CGTGGCCGGT
GGCCGCCCGG TGCATGGCGT GGGTATCGAT GAGAACATCA CCACGGCCAG CTTCAAGGCC
CTGTTCAGCG CGCTGAACCG CTCGCTGAGC CAGCAGGAAG CAAAAGCGGC TTGA
|
|---|
| Protein sequence | MTMLKDPSKK YRAFPTIDLP DRTWPSKTIT QAPIWCSSDL RDGNQSLIEP MDSEKKLRFW
KTLVQVGVKE IEASFPSASQ TDFDFVRTLI QDGHIPDDTT IQVLTQARED LIARTFESLR
GAKKAIVHLY NATSPSFRRI VFNQDKQGVK DIAVNAAKLF VKYAAQQPET QWTFQYSPET
FSATEMEFAK EVCDAVIEVW NPTPEHKIIL NLPATVEVST PNIYADQIEW FCRNVSRRDS
VIISLHCHND RGTGIAATEL GLMAGADRAE GCLFGNGERT GNVDLVTLAL NLYTQGIDPL
LDFSDIDGVR KVVEECNQLP VHPRHPYVGD LVHTAFSGSH QDAIRKGFAK QQDGELWEVP
YLPIDPADIG RSYEAVIRVN SQSGKGGITY LLEQEYGISL PRRMQIEFSQ VVQGETDRLG
LEMTAQQIYS LLHKEYLQAN APYALVSHRL QEENGHSAVE VEVAGEGETT LHWRGKGNGA
LEALVAGLPI AVEIMDYNEH AIGAGTNAKA AAYIELRVAG GRPVHGVGID ENITTASFKA
LFSALNRSLS QQEAKAA
|
|---|
| |