| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1057 |
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| Symbol | |
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| ID | 5190176 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 1188859 |
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| End bp | 1190202 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640585515 |
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| Product | carbohydrate-selective porin OprB |
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| Protein accession | YP_001266402 |
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| Protein GI | 148546300 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3659] Carbohydrate-selective porin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.177917 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACAGC GCAAACGCAT CAAGACACTG GGATCGCTGG CTCTGCTTGC ACTTGTAGGC
AGCAGCGGTA CACAGGCTGC CGAGGCTTTT TCCAGCGAAT CCAAATGGAT GACCGGCGAC
TGGGGCGGCA CCCGGACCGA GCTGCTGGAC AAGGGCTATG ACTTCACCCT CGATTATGTG
GGTGAGGTGG CTGGCAACCT GCATGGCGGC TACAACGACG ACAAGACAGC ACGCTACAGC
GACCAGTTCG CCCTCGGCGC GCATCTGGAC TTGCAGAAGA TACTGGGCTG GCATGATGCC
GAGTTCAAGC TGGCAATCAC CGAGCGAAGC GGTCGCAACC TGTCCAACGA CCGCATCAGC
GACCCGCGCG CCGGGCAGTT CAGCTCGGTG CAGGAGGTGT GGGGCCGTGG CCAGACCTGG
CGCCTGACCC AGATGTGGAT CAAGCAGAAG TACTTCGACG GCGCGCTTGA CGTGAAATTT
GGCCGTTTTG GCGAGGGGGA GGACTTCAAC AGCTTCCCTT GCGACTTCCA GAACCTGGCC
TTCTGCGGCT CGCAGGTGGG CAACTGGGTG GGCGGTATCT GGTACAACTG GCCGGTCAGC
CAGTGGGCGC TGCGGGTGAA GTACAACATC ACCCCGGCGT TCTTTGTGCA GGTCGGGGCC
TTCGAGCAGA ACCCCTCCAA CCTGGAAACC GGCAACGGCT TCAAGCTGAG CGGTAGCGGT
ACCAAGGGAG CGATCTTGCC GGTGGAAGCG GTGTGGTCGC CCAAGGTCAA TGGCCTGCCA
GGCGAGTACC GCCTAGGCTA CTACTACAGC ACGGCCAAGG CTGACGATGT GTACGACGAT
GTCAACGGCA ACCCGCAGGC GCTGACCGGT GAGGCCTTCA AGTCCCATTC CAGCAAGCAC
GGATGGTGGG TGGTGGCGCA GCAGCAGGTC ACTGCCCATG GCGGCGACGT CAACCGGGGC
CTCAGCCTGT TCGCCAACTT CACCGTGCAC GACAAGGCCA CCAACGTGGT CGACAACTAC
CAACAGGTGG GGCTGGTCTA CAAAGGCGCT TTCGACGCCC GGCCCAAGGA TGACATCGGC
TTCGGCGTGG CGCGAATTCA TGTGAATGAC GACGTGAAGA AGCGCGCCGA ACTGCTCAAC
GCACAGAGCG GCATCAACGA TTACGACAAC CCTGGTTTCG TACCGCTGCA GCGTACCGAA
TACAACGCAG AGCTCTACTA CGGCTTCCAC GTCACCAACT GGCTGACCGT GAGGCCCAAC
CTGCAGTACA TCAAGAGCCC TGGTGGGGTG GACGAGGTGG ATAACGCGCT GGTCGCTGGC
TTGAAGATTC AGTCGTCATT CTGA
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| Protein sequence | MEQRKRIKTL GSLALLALVG SSGTQAAEAF SSESKWMTGD WGGTRTELLD KGYDFTLDYV
GEVAGNLHGG YNDDKTARYS DQFALGAHLD LQKILGWHDA EFKLAITERS GRNLSNDRIS
DPRAGQFSSV QEVWGRGQTW RLTQMWIKQK YFDGALDVKF GRFGEGEDFN SFPCDFQNLA
FCGSQVGNWV GGIWYNWPVS QWALRVKYNI TPAFFVQVGA FEQNPSNLET GNGFKLSGSG
TKGAILPVEA VWSPKVNGLP GEYRLGYYYS TAKADDVYDD VNGNPQALTG EAFKSHSSKH
GWWVVAQQQV TAHGGDVNRG LSLFANFTVH DKATNVVDNY QQVGLVYKGA FDARPKDDIG
FGVARIHVND DVKKRAELLN AQSGINDYDN PGFVPLQRTE YNAELYYGFH VTNWLTVRPN
LQYIKSPGGV DEVDNALVAG LKIQSSF
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