Gene Pput_1045 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_1045 
Symbol 
ID5194727 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp1174414 
End bp1174926 
Gene Length513 bp 
Protein Length170 aa 
Translation table11 
GC content62% 
IMG OID640585503 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001266390 
Protein GI148546288 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.162254 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGTCAGT CCCGGTTCAA TTCCGTCTTC CTCGTTCAGC GCCTCACCCT GCTGCGTACC 
CTGCAGCGCA TGGTCGGTAA CCCCAGCACG GCCGAAGACC TGCTGCAGGA AACCTACCTG
CGGGTCTCCC GCGCGCTGGG CGAGCGGCCC ATCGAGCACA TCGAGCCGTT TGTGTTTCAG
ACCGCGCGCA ACCTGGCGCT GGACCACCTG CGTGCACGCC GGGTGCAGGC ACGCATGCTG
GTCGACGACG TGCCCGACGA AGTGCTGCAC AGTGTCGCCG CGCCCGCCAC CAGCAGCGAG
GATGCCGCGC ACGCCGAGCA GTTGCTCAAG CACCTCAGCG TCAGCCTCAA TCAACTGAGC
GAACGCCAAC AACGCATTTT CATCCTCAGC CGCCTGCATG GCGCCACCTA TCTGGAAATC
GCCGAACAAC TGAGTGTTTC GCCCAGCACA GTACAAAAGG AACTGAAACT GATCATGGCA
ATCTGCATGG GTGTTGCCGA ACGACTCAAG TAA
 
Protein sequence
MSQSRFNSVF LVQRLTLLRT LQRMVGNPST AEDLLQETYL RVSRALGERP IEHIEPFVFQ 
TARNLALDHL RARRVQARML VDDVPDEVLH SVAAPATSSE DAAHAEQLLK HLSVSLNQLS
ERQQRIFILS RLHGATYLEI AEQLSVSPST VQKELKLIMA ICMGVAERLK