| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1044 |
|---|
| Symbol | |
|---|
| ID | 5194726 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 1173363 |
|---|
| End bp | 1174325 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640585502 |
|---|
| Product | anti-FecI sigma factor, FecR |
|---|
| Protein accession | YP_001266389 |
|---|
| Protein GI | 148546287 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3712] Fe2+-dicitrate sensor, membrane component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.645854 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGACA GCCCTGCCCC TCGCCCGTCA CCTGCCAGGC CTATTGCCCG TGCTCGTGCC
ATGGACGAGG CGCTGGACTG GCTGGTGCGC CTGCAATGCG CAGATGCCGA GGACACCCAG
GCCTTTGAAG CCTGGCTAAG CGCCGCGCCA GAAAACGCCG AGGCCTATGT CGAGGCTGAG
GCACTGTGGA ACGGTGCGCC GTTGCATCAG GTGGCCACGC ACATGCACCA GCGGCAACGC
CGCTCATTAC GCGGGCGCCT GCGCAGTCAC TGGAAACCCC TGGCCACCGC GGCGCTGCTG
CTGGTCGGGC TGTTCACCGT CGGTAACCTG CCCATGCGCC TGCAGGCCGA CCACCTTACG
GTGGTCGGCG AGCGCCAGCG CCTGCAACTG GAAGACGGCG CAAAAGTGCT GCTCAACACC
AATTCAGCGT TTGCCAGCGA ACGCCAGGAC GGCCGCCAGG TCGCCCGCCT GCTACAGGGC
GAGGCTTACT TCCAGGTCCC CGAGGGCGCG CAGCTGCCGC TGGAGGTGGA AGCCGGGCCG
TTGCGCGCAC AGGTGCGCGA CACCGACTTT GCCGTGCGCT ACCTTGACGG CGAGGCCCAG
GTACGGGTGC AACGCGGGGA TGTCGACCTG CAGTGGGATC GTGACCAGCG CATCCGCTTG
ACTGCCGGCG ACAGCATCAG CGTCGGCCCC CAGGGCTTTG GCCAGCGCCA GCGCCCCGAC
ATGCACAAGG ACCTGGCCTG GATCGACGGC CGTCTTGTGT TCGAGAACTG CCCGTTGAGC
CAGGTACTGG CTGAAGTGCA GCGCTACTAC CCGGGCTGGA TCATCAACCG CAATGCACAG
CTGGAGAACG TTGCCGTCAC CGGTAACTAT CGCCTCGACC AGCCGCTGGA AACCCTGCGC
GCACTGGCCC ACATCACCTC GGCACAACTG CATGAGTACC CGGCGCTGGT CATCCTGAAC
TGA
|
|---|
| Protein sequence | MTDSPAPRPS PARPIARARA MDEALDWLVR LQCADAEDTQ AFEAWLSAAP ENAEAYVEAE
ALWNGAPLHQ VATHMHQRQR RSLRGRLRSH WKPLATAALL LVGLFTVGNL PMRLQADHLT
VVGERQRLQL EDGAKVLLNT NSAFASERQD GRQVARLLQG EAYFQVPEGA QLPLEVEAGP
LRAQVRDTDF AVRYLDGEAQ VRVQRGDVDL QWDRDQRIRL TAGDSISVGP QGFGQRQRPD
MHKDLAWIDG RLVFENCPLS QVLAEVQRYY PGWIINRNAQ LENVAVTGNY RLDQPLETLR
ALAHITSAQL HEYPALVILN
|
|---|
| |