| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1005 |
|---|
| Symbol | hisD |
|---|
| ID | 5193498 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 1130101 |
|---|
| End bp | 1131426 |
|---|
| Gene Length | 1326 bp |
|---|
| Protein Length | 441 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640585463 |
|---|
| Product | histidinol dehydrogenase |
|---|
| Protein accession | YP_001266350 |
|---|
| Protein GI | 148546248 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0141] Histidinol dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00069] histidinol dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.866219 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTGT CCACTGCAAT TGCCCGTCTC AACGCCGCTG ATCCGGATTT CGCCCGACAT
CTGGATCATC TGCTGAGCTG GGAAAGTGTG TCCGATGACG CGGTCAATCA GCGCGTGCTC
GACATCATCA AGGCCGTGCG TGAACGCGGT GATGCGGCGC TGGTGGAATT CACCCAGCGC
TTCGATGGTG TTGACGCCAA GTCGATTGAC GACCTGATCC TCAATCGCGC GCGCCTGGAA
CTGGCGCTGA CCCGTATTAC CCCGGTCCAG CGCGAGGCCC TGGAAAAGGC CGCCAACCGT
GTGCACATTT ATCACGAGCG GCAGAAGCAG GATTCCTGGC AGTACACCGA GGCCGACGGC
ACCGTGCTCG GCCAGAAGGT CACCCCGCTG GACCGTGCTG GCCTGTATGT GCCGGGCGGC
AAGGCGTCGT ACCCGTCGTC GGTGCTGATG AACGCCATCC CGGCCAAGGT TGCCGGCGTG
GCTGAAGTGG TGATGGTGGT ACCGACCCCG CGTGGTGAGG TCAACGAGCT GGTGCTGGCG
GCTGCCTGCA TCGCCGGTGT CGACCGGGTG TTCACCGTCG GTGGTGCCCA GGCCGTGGCT
GCGCTGGCCT ACGGTACTGA AAGCGTGCCG CAGGTGGACA AGATCGTCGG CCCGGGCAAC
ATCTACGTTG CCACCGCCAA ACGCCACGTG TTCGGCCAGG TCGGCATTGA CATGATCGCC
GGCCCCTCGG AAATTCTCGT GGTGTGCGAC GGTCAGACCG ACCCGGACTG GATTGCCATG
GACCTGTTCT CCCAGGCCGA GCACGACGAA GACGCCCAGG CCATCCTGGT CAGCCCGGAT
GCCGCCTTCC TCGATCGTGT GGCTGCCAGC ATCGACAAGC TGATGCCGAC CATGGAACGT
GCCGATATCA TCGAGAAGTC GATCAATGGC CGTGGTGCGC TGATCCAGGT GCGTGACATG
CAGCAGGCCA TGGACGTGGC CAACCGCATT GCACCGGAGC ACCTGGAGCT GTCGGTGGCC
GACCCGCAAG CCTGGCTGCC ACACATTCGC CACGCTGGCG CGATCTTCAT GGGCCGCCAC
ACCAGCGAAG CGCTGGGCGA TTACTGCGCT GGCCCTAACC ACGTGCTGCC CACTTCAGGT
ACCGCGCGTT TTTCGTCGCC GCTGGGGGTG TATGACTTCC AGAAGCGTTC GTCGATCATC
TTCTGCTCCG AACAGGGCGC GTCCGAACTG GGCCACACTG CCTCGGTCCT GGCTCGTGGC
GAGTCGCTGA CCGCCCACGC CCGCAGCGCT GAATACCGTA TCCTGACCCA AGAGAAGGGG
AACTGA
|
|---|
| Protein sequence | MTVSTAIARL NAADPDFARH LDHLLSWESV SDDAVNQRVL DIIKAVRERG DAALVEFTQR
FDGVDAKSID DLILNRARLE LALTRITPVQ REALEKAANR VHIYHERQKQ DSWQYTEADG
TVLGQKVTPL DRAGLYVPGG KASYPSSVLM NAIPAKVAGV AEVVMVVPTP RGEVNELVLA
AACIAGVDRV FTVGGAQAVA ALAYGTESVP QVDKIVGPGN IYVATAKRHV FGQVGIDMIA
GPSEILVVCD GQTDPDWIAM DLFSQAEHDE DAQAILVSPD AAFLDRVAAS IDKLMPTMER
ADIIEKSING RGALIQVRDM QQAMDVANRI APEHLELSVA DPQAWLPHIR HAGAIFMGRH
TSEALGDYCA GPNHVLPTSG TARFSSPLGV YDFQKRSSII FCSEQGASEL GHTASVLARG
ESLTAHARSA EYRILTQEKG N
|
|---|
| |