| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0991 |
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| Symbol | |
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| ID | 5192051 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 1119150 |
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| End bp | 1120643 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640585449 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_001266336 |
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| Protein GI | 148546234 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACCAT CGCTCGTCCT AAAAATGGGC CAGCAACTGA CGATGACACC TCAGTTGCAA
CAGGCCATCC GCCTGCTCCA GCTCTCTACC CTGGACCTCC AACAGGAAAT CCAGGAAGCG
CTGGAGTCGA ACCCGATGCT CGAACGTCAG GAAGACGGCG AAGACTTCGA CAACAGCGAC
CCGATGGCCG ACAACGCCGA GAACAAGCCG GCCGCCGAAG TTCAGGACAA CAGTTTCCAG
GAAAGCACCG TCAGCGCCGA CAACCTGGAA GACGGTGAGT GGAGCGAGCG CATCCCCAAC
GAGCTCCCGG TTGATACGGC CTGGGAAGAC ATCTACCAGA CCAGCGCCAG CAGCCTGCCG
AGCAACGATG ATGACGAATG GGACTTCACC ACGCGCACAT CGGCCGGCGA AAGCCTGCAA
AGCCACCTGC TGTGGCAGTT GAACCTGGCG CCGATGTCCG ACACCGACCG CTTGATTGCC
GTGACCCTGA TCGACAGCAT CAACGGCCAG GGCTACCTGG AAGACACACT CGAAGAAATC
TGCGCCGGTT TCGACCCGGA GCTGGATATC GAGCTGGACG AGGTCGAAGC AGTACTGCAC
CGCATCCAGC AGTTCGAGCC GGCTGGCGTC GGCGCCCGCA ACCTGGGCGA ATGCCTGTTG
CTGCAACTGC GCCAGCTGCC CGCTACAACG CCGTGGATGA CCGAAGCCAA GCGCCTGGTT
ACCGATTTCA TCGACCTGCT CGGCAGCCGT GACTACAGCC AGCTGATGCG GCGGATGAAA
ATCAAGGAAG ACGAGCTGCG CCAGGTCATC GAACTGGTGC AAAGCCTTAA CCCGCGCCCT
GGTTCGCAGA TCGAGTCCAG CGAGCCCGAG TACGTGGTGC CCGACGTCAT CGTGCGCAAG
GACAGCGACC GTTGGCTGGT AGAACTGAAC CAGGAAGCCA TCCCACGCCT GCGCGTCAAC
CCACAATACG CCGGCTTCGT GCGCCGTGCC GACACCAGCG CCGACAACAC CTTCATGCGC
AACCAGCTGC AGGAAGCGCG CTGGTTCATC AAGAGCCTGC AGAGCCGTAA CGAAACCCTG
ATGAAGGTTG CCACGCAGAT CGTCGAGCAC CAGCGCGGCT TCCTCGACCA CGGCGACGAA
GCGATGAAGC CGTTGGTACT GCATGACATT GCCGAAGCCG TAGGCATGCA CGAATCGACC
ATCTCGCGGG TTACCACGCA GAAATACATG CACACCCCGC GTGGCATCTA CGAACTGAAA
TACTTTTTCT CCAGCCATGT CAGCACCTCC GAAGGCGGAG AATGCTCGTC CACGGCGATC
CGCGCGATCA TCAAGAAACT GGTTGCGGCG GAAAATCAGA AAAAGCCATT GAGTGACAGC
AAGATCGCTG GTTTACTGGA GGCACAAGGC ATCCAGGTAG CCCGTCGCAC CGTCGCCAAG
TACCGCGAGT CCCTCGGCAT CGCACCGTCG AGCGAACGCA AGCGACTGAT GTAG
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| Protein sequence | MKPSLVLKMG QQLTMTPQLQ QAIRLLQLST LDLQQEIQEA LESNPMLERQ EDGEDFDNSD
PMADNAENKP AAEVQDNSFQ ESTVSADNLE DGEWSERIPN ELPVDTAWED IYQTSASSLP
SNDDDEWDFT TRTSAGESLQ SHLLWQLNLA PMSDTDRLIA VTLIDSINGQ GYLEDTLEEI
CAGFDPELDI ELDEVEAVLH RIQQFEPAGV GARNLGECLL LQLRQLPATT PWMTEAKRLV
TDFIDLLGSR DYSQLMRRMK IKEDELRQVI ELVQSLNPRP GSQIESSEPE YVVPDVIVRK
DSDRWLVELN QEAIPRLRVN PQYAGFVRRA DTSADNTFMR NQLQEARWFI KSLQSRNETL
MKVATQIVEH QRGFLDHGDE AMKPLVLHDI AEAVGMHEST ISRVTTQKYM HTPRGIYELK
YFFSSHVSTS EGGECSSTAI RAIIKKLVAA ENQKKPLSDS KIAGLLEAQG IQVARRTVAK
YRESLGIAPS SERKRLM
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