Gene Pput_0984 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_0984 
SymbolfumC 
ID5190393 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp1113723 
End bp1115102 
Gene Length1380 bp 
Protein Length459 aa 
Translation table11 
GC content62% 
IMG OID640585442 
Productfumarate hydratase 
Protein accessionYP_001266329 
Protein GI148546227 
COG category[C] Energy production and conversion 
COG ID[COG0114] Fumarase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGAGTG ATACCCGTAT CGAGCGTGAC AGCATGGGTG AGCTGCAGGT GCCGGCCCAG 
GCCCTCTACG GCGCCCAGAC CCAGCGCGCG GTCGACAACT TCCCGATCAG CGGCCAACGT
ATGCCGGCCC AGTTCATTCG TGCCTTGTTG TTGGCCAAGG CCGCTGCGGC CAAGGCCAAC
GTCGAACTGG AGCAACTGTC TGCCGGGCGG GGCCAGGCTA TCGTCAAGGC TGTCGAGCAA
TTGCTGGCCG AGGACTTCAT CCAGCACTTC CCGGTGGATG TGTTCCAGAC AGGCTCTGGC
ACCAGTTCGA ACATGAACGC CAATGAGGTG ATCGCCACCT TGGCTACCCA TGTACTGGGT
GAGGCGGTCA ACGCCAATGA CCACGTCAAC TGTGGCCAGA GCAGCAATGA CATCATTCCG
ACCACCATCC ACGTCAGCGC CGCGCTGGCC CTGCACGAGC AGTTGCTGCC AGCCCTGGCG
CACCTGGTAC AGGTGATCGA GGTCAAGTCG GCACAAGTAC ATCAATTCGT GAAGACCGGT
CGTACTCACC TGATGGACGC GATGCCCGTG CGTATGAGTC AGGTGCTGGA TGGCTGGGCA
GCGCAAATCA ATGCTGCCAA GGCGCACATC GAAGGTGTGC TGCCGCGCTT GCAGGCGCTG
GCCCAGGGCG GAACCGCCGT GGGTACCGGC ATCAATGCCC ATCCGCAGTT CGCTGTCGGT
TTCGCTCGCC AGCTCAGTGG CCTGACCAAG ATCGAGTTCA CGCCCGGCCA GAACCTGTTC
GCACTGATCG GCTCGCAGGA CACTGCCGTG GCTTTGTCTG GCCAGCTCAA GACCACCGCG
GTGGCGTTGA TGAAAATCGC CAACGATCTG CGCTGGATGA ACTCCGGCCC GCTGGCCGGT
CTGGGCGAAA TCGAGCTGCA AGCTCTGCAG CCGGGCTCTT CGATCATGCC TGGCAAGGTC
AACCCGGTGA TCCCGGAGGC CACTGCCATG GTCGCCGCCC AAGTGATTGG CAACGACGCG
ACCATCGCCG TCGCAGGCCA AGCCGGTAAC TTCGAGCTGA ACGTGATGCT GCCGGTGATC
GCCCGCAACC TGCTGGAAAG CATCGAGCTG ATGGCCAATG TCAGCCGCTT GCTGGCCGAC
AAAGCCATCG CCAGCTTCAA GGTCAACGAA GACAAACTCA AGGAAGCGCT CGCGCGCAAC
CCGATTCTGG TCACGGCGTT GAATCCGATC ATCGGCTACC TCAAGGCCGC CGAAATCGCC
AAGACCGCCT ACAAGCAGGG TCGTCCAATC ATCGATGTGG CGCTGGAGCA CACCGACCTG
TCCCGCGACC AGCTTGAAGC GCTGCTGGAC CCGGAAAAAC TCACCGCCGG CGGTATCTGA
 
Protein sequence
MMSDTRIERD SMGELQVPAQ ALYGAQTQRA VDNFPISGQR MPAQFIRALL LAKAAAAKAN 
VELEQLSAGR GQAIVKAVEQ LLAEDFIQHF PVDVFQTGSG TSSNMNANEV IATLATHVLG
EAVNANDHVN CGQSSNDIIP TTIHVSAALA LHEQLLPALA HLVQVIEVKS AQVHQFVKTG
RTHLMDAMPV RMSQVLDGWA AQINAAKAHI EGVLPRLQAL AQGGTAVGTG INAHPQFAVG
FARQLSGLTK IEFTPGQNLF ALIGSQDTAV ALSGQLKTTA VALMKIANDL RWMNSGPLAG
LGEIELQALQ PGSSIMPGKV NPVIPEATAM VAAQVIGNDA TIAVAGQAGN FELNVMLPVI
ARNLLESIEL MANVSRLLAD KAIASFKVNE DKLKEALARN PILVTALNPI IGYLKAAEIA
KTAYKQGRPI IDVALEHTDL SRDQLEALLD PEKLTAGGI