Gene Pput_0970 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_0970 
SymbolgatB 
ID5190930 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp1096530 
End bp1097975 
Gene Length1446 bp 
Protein Length481 aa 
Translation table11 
GC content61% 
IMG OID640585428 
Productaspartyl/glutamyl-tRNA amidotransferase subunit B 
Protein accessionYP_001266315 
Protein GI148546213 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0064] Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 
TIGRFAM ID[TIGR00133] glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.353776 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0743731 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAATGGG AAGTTGTGAT CGGGCTGGAA ATCCACACTC AGCTCGCCAC CCAGTCGAAG 
ATCTTCTCCG GCAGCGCTAC CACCTTTGGC TCCGAGCCGA ATACTCAGGC CAGCCTGGTT
GACCTGGGCA TGCCCGGTGT ACTGCCGGTA CTGAACGAGG AGGCCGTGCG CATGGCGTGC
ATGTTCGGCC TGGCCATCGA TGCCGAAATC GGCAAGCGCA ACGTGTTCGC ACGCAAGAAC
TACTTCTACC CCGACCTGCC CAAGGGCTAC CAGATCAGCC AGATGGACCT GCCGATCGTC
GGCAAGGGCC ACCTGGACAT CGCGCTGGAA GACGGCACCA TCAAGCGCAT CGGCGTAACC
CGCGCGCACC TGGAAGAAGA CGCCGGCAAG AGCCTGCACG AAGACTTCAG CGGCTCCACC
GGCATCGACC TGAACCGTGC CGGCACCCCG CTGCTGGAAA TCGTCTCCGA GCCTGACATG
CGCAGCGCCA AGGAAGCCGT GGCTTACGTC AAGGCAATCC ACGCGCTGGT GCGCTACCTG
GGCATCTGTG ACGGCAACAT GGCCGAAGGT TCGCTGCGCT GCGACTGCAA CGTATCGATC
CGCCCGAAAG GCCAGACCGA GTTCGGCACT CGCTGCGAAA TCAAGAACGT CAACTCGTTC
CGTTTTATCG AGCGCGCGAT CAACAGCGAA ATCCAGCGCC AGATCGACCT GATCGAAGAC
GGTGGCAAAG TCGTGCAGGA AACACGCCTG TACGACCCGA ACAAGGACGA AACCCGCTCC
ATGCGCAGCA AAGAGGAAGC TAACGACTAC CGTTACTTCC CCGACCCCGA CCTGCTGCCG
GTGGTCATCG AGGACAGCTT CCTCGAAACC ATTCGCGCCG GCCTGCCGGA GCTGCCGCCA
CAGAAGGTCG AGCGCTTCCA GACTCAGTAC GGTCTGTCGG CCTACGACGC CAACGTGTTG
GCTTCCAGCC GCGAACAGGC TGACTACTTC GAAGAAGTGG TGAAGATCGG TGGTGATGCC
AAGCTGGCGG CCAACTGGGT CATGGTCGAA CTGGGTAGCC TGCTGAACAA GCTGGGTGTC
GAAATCGATC AGGCGCCGGT CAGCGCTGCG CAACTGGGCG GCATGCTGCT GCGCATTCGT
GACAACACCA TCAGCGGCAA GATTGCCAAG ACCGTGTTCG AGGCCATGGC CGCCGGTGAA
GGCGATGCCG ACAGCATCAT CGAGAGCAAA GGCCTGAAAC AGGTTACCGA CACGGGTGCG
ATCGACAAGA TGCTCGACGA AATGCTGGCA GCCAATGCCG AGCAGGTCGA ACAATATCGC
GCAGCCGATG AGGCCAAGCG CGGCAAGATG TTCGGCTTCT TCGTCGGTCA GGCCATGAAA
GCTTCCAAAG GCAAGGCCAA CCCGGGGCAG GTGAACCAAT TGCTCAAGGC CAAGCTCGAA
GGGTGA
 
Protein sequence
MQWEVVIGLE IHTQLATQSK IFSGSATTFG SEPNTQASLV DLGMPGVLPV LNEEAVRMAC 
MFGLAIDAEI GKRNVFARKN YFYPDLPKGY QISQMDLPIV GKGHLDIALE DGTIKRIGVT
RAHLEEDAGK SLHEDFSGST GIDLNRAGTP LLEIVSEPDM RSAKEAVAYV KAIHALVRYL
GICDGNMAEG SLRCDCNVSI RPKGQTEFGT RCEIKNVNSF RFIERAINSE IQRQIDLIED
GGKVVQETRL YDPNKDETRS MRSKEEANDY RYFPDPDLLP VVIEDSFLET IRAGLPELPP
QKVERFQTQY GLSAYDANVL ASSREQADYF EEVVKIGGDA KLAANWVMVE LGSLLNKLGV
EIDQAPVSAA QLGGMLLRIR DNTISGKIAK TVFEAMAAGE GDADSIIESK GLKQVTDTGA
IDKMLDEMLA ANAEQVEQYR AADEAKRGKM FGFFVGQAMK ASKGKANPGQ VNQLLKAKLE
G