| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0966 |
|---|
| Symbol | |
|---|
| ID | 5193977 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 1092420 |
|---|
| End bp | 1093361 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640585424 |
|---|
| Product | auxin efflux carrier |
|---|
| Protein accession | YP_001266311 |
|---|
| Protein GI | 148546209 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0679] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.842847 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0576497 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGCCC TTCTTATCCA GACCCTGAAC ATCACGGCAC CGGTTTTCGC CATGCTGTTC
ATGGGCGTCC TGCTCAAACG CATTCACTTG ATCGACGACA ACTTCAACCG CGTCGCCTCG
CAGCTGGTAT TCAACGTCTG CATGCCGGCG CTGCTCTTCC TCGGCATCTA CCACGCCGAC
CTGGCCGCAG CGGTCAAGCC CGGTGTCATC CTGTATTTCA TCGTCGCCAC CTTGGTCGGT
TTCGCCATTG CCTGGGGCAT GGCCATCTGG CGCAGCCCGA TGGCCGACCG AGGCATCTAT
ACCCAGGGCG CCTTCCGCGG CAACAACGGT GTGATCGGCC TGGCCCTGGC CGCCAGCCTG
TACGGTGACT ATGGCATATC CCTGGGGGCG GTGCTCGCAG GCCTGGTCAT CCTCATGTAC
AACTCGCTGT CAGCGGTGGT ACTGGCGGTG TACAGCCCGG ACCTCAAGTC CGACCCGTGG
AGCATCTGCA AGAGCATTTT CAGCAACCCG CTGATCATCA GCGTGCTGGT GGCCGCGCCG
ATGGCTTACG GCCAGGTGCC GCTGCCCAAC TGGCTACTGA CCTCGGGCGA CTACCTGGCA
CAGATGACCC TGCCGCTGGC GCTGATCTGT ATCGGTGGCA CGCTGTCGCT GGCAGCGCTG
CGTAACTGTG GCCGGCTGGC CATCGATGCC AGCCTCGTGA AAATGCTCTG GCTGCCGCTG
CTCGGCACCC TTGGGGCCTG GTTGTGCGGG TTTCGCGGGG CGGAGCTGGG CATCCTGTTC
CTGTACATAG GCAGCCCGAC CGCTGCGGCC AGCTACGTGA TGGCGCGGGC GGCCAACGGC
AATCATGAAC TGGCCGCGTC GATCATCGTG ATTACCACGC TAATGGCGGC GATCACCACC
AACATTGGTA TTTTCATCTT GCAGTGGGGC GGATGGATCT AG
|
|---|
| Protein sequence | MLALLIQTLN ITAPVFAMLF MGVLLKRIHL IDDNFNRVAS QLVFNVCMPA LLFLGIYHAD
LAAAVKPGVI LYFIVATLVG FAIAWGMAIW RSPMADRGIY TQGAFRGNNG VIGLALAASL
YGDYGISLGA VLAGLVILMY NSLSAVVLAV YSPDLKSDPW SICKSIFSNP LIISVLVAAP
MAYGQVPLPN WLLTSGDYLA QMTLPLALIC IGGTLSLAAL RNCGRLAIDA SLVKMLWLPL
LGTLGAWLCG FRGAELGILF LYIGSPTAAA SYVMARAANG NHELAASIIV ITTLMAAITT
NIGIFILQWG GWI
|
|---|
| |